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DiffBind
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DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind
ATACSeq
30 minutes ago
Pierre Lindenbaum
▴ 10
0
votes
0
replies
79
views
Multifactor analysis in DiffBind
DiffBind
multifactoranalysis
7 days ago
erbrocato
• 0
0
votes
2
replies
171
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
15 days ago • updated 14 days ago
Sam
▴ 10
0
votes
1
reply
143
views
Exact same results in Diffbind with different normalization methods
DiffBind
16 days ago • updated 11 days ago
red_bricks
▴ 50
0
votes
3
replies
552
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diffbind analyze for wheat
DiffBind
updated 28 days ago by
Igor
• 0 • written 6 months ago by
zgyu12
• 0
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3
replies
1.1k
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Blacklist error in DiffBind
DiffBind
Blacklist
updated 19 days ago by
marram_wang
• 0 • written 16 months ago by
Romain
• 0
6 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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