Bioconductor Differential Analysis

Showing : Differential Analysis • reset

vote

399

views

DiffBind PCA Differential Analysis

updated 3.2 years ago by Rory Stark ★ 4.8k • written 3.2 years ago by jrp208 • 0

votes

886

views

diffbind ATACseq ATAC counts differential analysis

updated 4.2 years ago by Rory Stark ★ 4.8k • written 4.2 years ago by pgontarz ▴ 10

votes

738

views

diffbind differential analysis genetics #chip-seq

updated 4.2 years ago by Rory Stark ★ 4.8k • written 4.3 years ago by ryclb22 • 0

votes

680

views

edgeR FDR p-value Benjamini-Hochberg Differential Analysis

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by ilovesuperheroes1993 • 0

votes

793

views

diffbind atac-seq differential analysis deseq2

updated 4.6 years ago by Rory Stark ★ 4.8k • written 4.6 years ago by duvaller • 0

vote

replies

1.1k

views

deseq2 deseq differential analysis proteomics

5.2 years ago blehtine • 0

votes

802

views

differential analysis differential gene expression coexpression correlation

updated 5.2 years ago by Peter Langfelder ★ 2.8k • written 5.2 years ago by hkarakurt ▴ 20

votes

replies

1.3k

views

mast single-cell rna-seq differential analysis

updated 5.4 years ago by Andrew_McDavid ▴ 270 • written 5.4 years ago by shao ▴ 100

votes

replies

797

views

reportingtools microarray annotation differential expression differential analysis

updated 5.5 years ago by James W. MacDonald 63k • written 5.5 years ago by jirkanov • 0

vote

replies

3.5k

views

deseq2 multiple factor design differential analysis differential gene expression

updated 5.5 years ago by Michael Love 40k • written 5.5 years ago by hsbio ▴ 10

vote

replies

1.9k

views

DiffBind dba.count Chip-Seq Differential analysis

updated 2.2 years ago by Goku • 0 • written 5.7 years ago by urjaswita ▴ 40

11 results • Page 1 of 1

Recent ...

Replies

Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10

Thank you! I think that makes much sense to me.

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.8k

Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …

Comment: Interpret plot from DiffBind by Chris • 0

Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?

Answer: List of Deprecated Packages for Bioc3.17 by shepherl 3.5k

lfa and gcatest have been reinstated.

Comment: Remove duplicate genera in DEseq output? by Lluís Revilla Sancho ▴ 710

How is your data before calculating the deg_DESeq? I see you use `phyloseq_to_deseq2` which should work well, but have you double checked t…

Votes

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

A: Generating a proper TxDb instance from NCBI GFF Annotations File

A: VariantAnnotation non-model species

Awards • All