Bioconductor Differential exon usage

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1.7k

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edger normalization differential exon usage splicing

updated 2.9 years ago by Yunshun Chen ▴ 810 • written 2.9 years ago by oakhamwolf • 0

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DEXSeq differential exon usage

updated 5.3 years ago by Alejandro Reyes ★ 1.9k • written 5.3 years ago by A ▴ 40

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 6.0 years ago by James W. MacDonald 63k • written 6.0 years ago by relathman ▴ 20

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egdeR multiple time points model.matrix differential exon usage model

6.1 years ago heikki.sarin ▴ 10

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1.4k

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dexseq differential exon usage

updated 6.6 years ago by mat.lesche ▴ 90 • written 6.6 years ago by Assa Yeroslaviz ★ 1.5k

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2.6k

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dexseq differential exon usage

6.6 years ago fizer ▴ 30

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deseq2 dexseq rnaseq differential gene expression differential exon usage

updated 6.7 years ago by Michael Love 40k • written 6.7 years ago by fizer ▴ 30

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674

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dexseq deseq2 differential exon usage

7.0 years ago ste.depo ▴ 10

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dexseq rsem differential exon usage differential gene expression

updated 7.2 years ago by James W. MacDonald 63k • written 7.2 years ago by Assa Yeroslaviz ★ 1.5k

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DEXSeq timecourse rna-seq differential exon usage

updated 7.6 years ago by Alejandro Reyes ★ 1.9k • written 7.6 years ago by MedwayC • 0

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1.4k

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DEXSeq differential exon usage exon usage

updated 7.8 years ago by Alejandro Reyes ★ 1.9k • written 7.8 years ago by biominer ▴ 10

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dexseq rnaseq differential exon usage

8.1 years ago arom2 • 0

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2.6k

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dexseq bitseq cuffdiff Differential exon usage isoforms

8.3 years ago • updated 8.2 years ago elle ▴ 10

13 results • Page 1 of 1

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Comment: DMRcate design by Jitendra ▴ 10

Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…

Votes

Answer: DMRcate design

Comment: DMRcate design

Answer: What MetaPhlAn3 database was used in cMD 3?

Comment: Speeding up of DelayedArray::write_block()

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