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Dispersion
•
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0
votes
13
replies
5.4k
views
DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2
dispersion
6.0 years ago
Frederik Ziebell
▴ 20
8
votes
12
replies
8.5k
views
EdgeR: Explaning dispersion types to newbies
edger
dispersion
estimatedispersions
visualization
teaching
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Mr.RB
▴ 20
0
votes
11
replies
2.2k
views
Strange dispersion plot
deseq2
dispersion
6.1 years ago
Moose123
• 0
5
votes
7
replies
6.6k
views
DESeq2 dispersion and p-value histograms
deseq2
rnaseq
fdrtool
dispersion
updated 6.4 years ago by
Bernd Klaus
▴ 610 • written 6.4 years ago by
rrcutler
▴ 70
0
votes
6
replies
1.5k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
4.9 years ago
fiona.dick91
▴ 60
3
votes
6
replies
2.8k
views
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
Dispersion
RNA-seq
DESeq2
Multiple-group
updated 3.1 years ago by
Michael Love
41k • written 3.4 years ago by
Kelen
▴ 10
4
votes
5
replies
1.1k
views
No counts, just fold change data
EdgeR
Estimation
Dispersion
2.8 years ago
Manal
• 0
0
votes
5
replies
2.5k
views
Dispersion calculation by DESeq2
DESeq2
dispersion
5.2 years ago
eva-m.petit
• 0
0
votes
4
replies
1.3k
views
DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2
dispersion
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
emilio.marmol
• 0
1
vote
3
replies
2.1k
views
Error Estimating the NB Dispersion of a Dataset
dispersion
edgeR
updated 7.8 years ago by
Gordon Smyth
50k • written 7.8 years ago by
humberto_munoz
• 0
3
votes
3
replies
1.8k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 4.8 years ago by
onlychainsaw2019
• 0 • written 5.2 years ago by
ilovesuperheroes1993
• 0
3
votes
3
replies
1.2k
views
DESseq2: Why can the dispersion be generelized over the conditions?
deseq2
dispersion
estimatedispersions
updated 5.8 years ago by
Ryan C. Thompson
★ 7.9k • written 5.8 years ago by
Mr.RB
▴ 20
2
votes
3
replies
1.5k
views
How to get dispersion values for DESeq2
deseq2
dispersion
R
updated 7.8 years ago by
Michael Love
41k • written 7.8 years ago by
hiraksarkar.cs
• 0
0
votes
3
replies
687
views
Dispersion outliers genes
Dispersion
DESeq2
10 months ago
raya.fai
▴ 60
3
votes
2
replies
3.9k
views
DESeq2 with high dispersions
deseq2
dispersion
low counts
8.7 years ago
meeta.mistry
▴ 30
1
vote
2
replies
1.3k
views
Common dispersion from estimateGLMRobustDisp()
edgeR
dispersion
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
Jane Merlevede
▴ 90
1
vote
2
replies
988
views
2-Factor Experiment in edgeR, Effect of no reps in one set and two reps in others
rnaseq
edger
differential expression
dispersion
updated 7.4 years ago by
Ryan C. Thompson
★ 7.9k • written 7.4 years ago by
nancyjwahl7
• 0
0
votes
2
replies
780
views
Normalization and dispersion estimates in timeseries data with highly variable read numbers
EdgeR
dispersion
normalization
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
Ruben.wauters
• 0
1
vote
2
replies
1.2k
views
Design formula in DESeq2
groups
dispersion
DESeq2
desing
2.3 years ago
m.glymenaki
• 0
2
votes
2
replies
463
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2
medianofratiostransformation
StatisticalMethod
Normalization
dispersion
11 weeks ago
Linton
• 0
0
votes
1
reply
1.2k
views
How do I turn off dispersion in DESeq2?
deseq2
dispersion
updated 8.1 years ago by
Michael Love
41k • written 8.1 years ago by
hans
• 0
1
vote
1
reply
860
views
Dispersion estimates with DESeq2
dispersionestimates
dispersion
DESeq2
estimates
deseq2
updated 20 months ago by
Michael Love
41k • written 20 months ago by
Julia
▴ 10
0
votes
0
replies
540
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
catalina.gonzalez-gomez
• 0
23 results • Page
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Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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