updated 7 months ago by
Michael Love
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written 8 months ago by
Julia
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Comment: how can I do gene differential analysis on data after vst
by
Gordon Smyth
47k
I advised you to use limma-trend, which you can look up in the limma User's Guide. You simply analyse the vst values as if they were from a…
Comment: how can I do gene differential analysis on data after vst
by
linouhao
▴
20
I'm so happy and surprised to get your professional reply.
library(limma)
library(edge)
counts <- read.csv("raw_counts.cs…
Comment: can negative value microarray matrix data analysed by limma directly
by
Gordon Smyth
47k
The discussion on research gate is not of much value.
Answer: can negative value microarray matrix data analysed by limma directly
by
Gordon Smyth
47k
limma is routinely used for all the preprocessing methods that you mentioned, and some of them are covered in the limma User's Guide.
Not …
Answer: how can I do gene differential analysis on data after vst
by
Gordon Smyth
47k
Differential expression analysis of vst values can be performed by limma-trend.
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