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EBSeq
•
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0
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1
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533
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EBTest error please add gene/isoform names to the data matrix
EBSeq
3.8 years ago
lli2
• 0
0
votes
3
replies
861
views
Heatmap for ebseq2 output
ebseq
4.9 years ago
drkousi31
• 0
5
votes
1
reply
1.0k
views
DE analysis when large portion of transcriptome is changed
rna-seq
edger
ebseq
differential expression
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
marhabaie
• 0
0
votes
0
replies
906
views
[EBSEQ] Strange NA values
ebseq
differential gene expression
7.7 years ago
jean.keller
▴ 10
0
votes
0
replies
900
views
[EBSeq] Normalization and DE genes detection
ebseq
normalization
differential gene expression
7.9 years ago
jean.keller
▴ 10
1
vote
1
reply
1.2k
views
EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq
ebseq-hmm
rna-seq
8.4 years ago
vieuphoria
▴ 10
0
votes
0
replies
890
views
Matching New Samples to Differential Expression Profile
differential expression
ebseq
rnaseq
8.7 years ago
jbarker2
• 0
0
votes
0
replies
1.4k
views
How to fully use the list of DEGs in non model species?
deseq2
gage
ebseq
rnaseq
8.7 years ago
jackipchiho
▴ 10
0
votes
2
replies
1.3k
views
EBSeq package gives NaN Values for EBMultiTest
differential expression
ebseq
rnaseq
8.9 years ago
jbarker2
• 0
0
votes
2
replies
2.8k
views
DE analysis with reference transcriptome
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
updated 9.9 years ago by
James W. MacDonald
65k • written 9.9 years ago by
Nicole Ertl
▴ 10
0
votes
1
reply
1.6k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 10.0 years ago by
Koji Kadota
▴ 10 • written 10.0 years ago by
Gordon Smyth
50k
0
votes
1
reply
1.7k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 10.0 years ago by
Jianqiang SUN
▴ 10 • written 10.0 years ago by
Pankaj Agarwal
▴ 100
0
votes
0
replies
1.0k
views
EBSeq Results Affected By Outlying Values
EBSeq
EBSeq
10.2 years ago
Dario Strbenac
★ 1.5k
13 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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michael.s
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James W. MacDonald
65k
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Pierre Lindenbaum
▴ 10
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Gordon Smyth
50k
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Jenny Drnevich
★ 2.0k
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