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EGSEA
•
reset
9
votes
7
replies
21k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 13 months ago by
amin8w
▴ 10 • written 7.5 years ago by
sina.nassiri
▴ 130
6
votes
6
replies
3.4k
views
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 4.2 years ago by
Martin
• 0 • written 5.6 years ago by
pgugger
▴ 70
0
votes
5
replies
2.9k
views
EGSEA generateReport() error "no adj nodes"
EGSEA
EGSEA123
updated 7.2 years ago by
Monther Alhamdoosh
▴ 40 • written 7.2 years ago by
Jenny Drnevich
★ 2.0k
0
votes
3
replies
2.6k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma
KEGGREST
EGSEA
updated 2.6 years ago by
shepherl
4.1k • written 2.6 years ago by
Jenny Drnevich
★ 2.0k
0
votes
1
reply
2.5k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 6.9 years ago by
Gordon Smyth
52k • written 6.9 years ago by
belmore
• 0
0
votes
4
replies
2.2k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways
gsea
egsea
gage
updated 8.3 years ago by
Monther Alhamdoosh
▴ 40 • written 8.3 years ago by
yingchen
• 0
2
votes
7
replies
2.1k
views
EGSEA - failing to write report
EGSEA
write
updated 8.0 years ago by
Monther Alhamdoosh
▴ 40 • written 8.0 years ago by
mforde84
▴ 20
2
votes
4
replies
2.0k
views
EGSEA usage with microarray data (with vooma)?
EGSEA
gene set testing
vooma
limma voom
gsea
updated 8 months ago by
Chris
▴ 20 • written 8.1 years ago by
Pekka Kohonen
▴ 190
0
votes
2
replies
1.7k
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
7.8 years ago
irizarnaunk
• 0
0
votes
2
replies
1.5k
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA
edgeR
biomaRt
limma
RNA-seq
5.4 years ago
fgol
▴ 10
1
vote
1
reply
1.4k
views
EGSEA : unable to plot heatmaps.
EGSEA
R bioconductor
7.4 years ago
RV
• 0
1
vote
0
replies
1.2k
views
EGSEA install licensed KEGG data
EGSEA
KEGG
EGSEAdata
7.0 years ago
john.thompson
▴ 10
0
votes
1
reply
1.0k
views
EGSEA::egsea - Parallelization issue and "Error in array(col.rgb[, i], dim(node.rgb)[3:1]) : negative length vectors are not allowed"
egsea
EGSEA123
21 months ago
neilzhao
▴ 30
0
votes
0
replies
1.0k
views
Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix
egsea
7.0 years ago
Stefano Mangiola
▴ 20
1
vote
0
replies
875
views
EGSEA - clarification of values in the Stats Table
egsea
limma
5.4 years ago
rocanja
▴ 60
3
votes
5
replies
740
views
Help with running egsea()
EGSEA
8 months ago
Chris
▴ 20
0
votes
1
reply
633
views
Is it possible to use pre-ranked list in EGSEA?
EGSEA
EGSEAdata
EGSEA123
DifferentialExpression
updated 17 months ago by
James W. MacDonald
67k • written 17 months ago by
Tiago
• 0
0
votes
1
reply
488
views
EGSEA with Affymetrix data
EGSEA
updated 14 months ago by
James W. MacDonald
67k • written 14 months ago by
cverschoor
• 0
18 results • Page
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by
delhirussianescortscom
• 0
Our escorts are well-groomed and well-trained to give you ultimate seduction and deep pleasure. If you're looking for hot Delhi air hostess…
Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…
Answer: Selection of correct coefficients or contrasts in DESeq2
by
James W. MacDonald
67k
Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…
Comment: How to generate circular cnetplot and color nodes and edges in the same plot ?
by
Blandine
• 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
James W. MacDonald
67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
Votes
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
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Robert Castelo
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Robert Ivanek
▴ 750
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shepherl
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Martin Morgan
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