Bioconductor EPIC

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1.7k

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limma epic methylation limma design matrix covariates

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by c.bettencourt • 0

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1.4k

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methylation Epic annotation DMRcate

updated 4.5 years ago by James W. MacDonald 65k • written 4.6 years ago by yoursbassanio ▴ 10

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1.3k

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methylation epic champ

updated 5.4 years ago by Yuan Tian ▴ 280 • written 5.4 years ago by D ▴ 10

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2.5k

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methylation epic champ champ.load() Methylation array

updated 4.3 years ago by Yuan Tian ▴ 280 • written 4.3 years ago by Ankit ▴ 20

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973

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lumi EPIC Methylation

4.0 years ago Zach Roe ▴ 10

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2.1k

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EPIC methylation ChAMP

updated 6.1 years ago by yura.grabovska ▴ 30 • written 6.1 years ago by david.ch • 0

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811

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ChAMP champ methylation EPIC

updated 4.3 years ago by Yuan Tian ▴ 90 • written 4.3 years ago by cherlyn.t • 0

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1.5k

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dmrcate bumphunter methylation epic

updated 7.0 years ago by James W. MacDonald 65k • written 7.0 years ago by yoursbassanio ▴ 10

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1.2k

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rnbeads EPIC

updated 4.9 years ago by mscherer ▴ 50 • written 4.9 years ago by Mark Dunning ★ 1.1k

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1.4k

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ChAMP EPIC Illumina Methylation

4.2 years ago erwin.tomasich ▴ 10

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938

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SVA EPIC methylation limma

updated 4.1 years ago by James W. MacDonald 65k • written 4.1 years ago by whyw6948 • 0

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1.6k

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minfi illuminaio epic

7.8 years ago m.van_iterson ▴ 20

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1.2k

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450k EPIC minfi limma cell components

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by antgomo • 0

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1.8k

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minfi 450k EPIC analysis

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by maduran • 0

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methylation EPIC scale-free topology WGCNA

updated 15 months ago by shuo • 0 • written 4.7 years ago by enora.fremy • 0

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1.0k

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methylumi minfi microarray epic

4.0 years ago • updated 3.5 years ago Nala • 0

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1.2k

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epic minfi read.metharray software error

7.9 years ago mcastrod • 0

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470

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Epigenetics combat EPIC

13 months ago Jitendra ▴ 10

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1.9k

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champ methylation 450k SVD EPIC News

7.7 years ago Yuan Tian ▴ 90

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1.4k

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epigenetics EPIC 450K ChAMP News

7.6 years ago Yuan Tian ▴ 90

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2.2k

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wateRmelon methylation EPIC normalization

7.3 years ago Wade Davis ▴ 60

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2.0k

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minfi idat annotation EPIC

updated 7.1 years ago by xue.zhang • 0 • written 7.2 years ago by Frocha ▴ 20

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1.9k

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methylation illumina EPIC methylationepic idat

updated 7.0 years ago by Guido Hooiveld ★ 3.9k • written 7.0 years ago by Ellen O • 0

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minfi methylation EPIC

5.8 years ago sichan • 0

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1.6k

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minfi methylation epic

5.7 years ago jbar3141 • 0

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895

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missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv

5.7 years ago peter.fransquet • 0

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2.1k

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ChAMP Normalization FunctionalNormalization methylation EPIC

5.6 years ago yuabrahamliu • 0

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1.0k

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methylationEPIC minfi microarray epigenetics EPIC

5.1 years ago rmf ▴ 20

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818

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microarray methylationEPIC epigenetics minfi EPIC

5.1 years ago rmf ▴ 20

29 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…

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Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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