Biostar EPICarray

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ChAMP methylationepic epicarray epigenomics

updated 5.4 years ago by rcavalca ▴ 140 • written 5.4 years ago by karthikrpad ▴ 10

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methylationArrayAnalysis EPICarray ChAMP Champ.SVD

22 months ago arisarkar88 ▴ 10

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

> table(seqnames(gr1)) #original data chr1 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 515 350 574 312 377 268 …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 39k

The number should be roughly 7000 across the iterations. Can you show table(seqnames(gr)) for the original and for one iteration of the b…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Thank you for your help Dr. Michael. One more doubt, my original loci contains 7000 locus on different chromosomes. When i am generating …

Comment: Strand information in a GAlignmentsList object derived from strand-specific pair by Robert Castelo ★ 3.0k

As James said, a `GAlignmentsList` object is the container for storing properly-paired, but with ambiguous pairing, alignments, and we're i…

Answer: Doubts about manipulation and annotation of microarray files deposited at GEO by James W. MacDonald 62k

Your first question is something that you will have to answer for yourself. There are any number of reasons that an array manufacturer will…

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A: Calculate S/N ratios from apeglm for GSEA

Calculate S/N ratios from apeglm for GSEA

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