Bioconductor EPICarray

Showing : EPICarray • reset

5

votes

5

replies

482

views

linearregression epicarray MethylationArray limma

3 months ago Jitendra ▴ 10

0

votes

3

replies

567

views

RnBeads minfiData minfi EPICarray

updated 6 months ago by Basti ▴ 740 • written 6 months ago by Jitendra ▴ 10

0

votes

2

replies

679

views

champ.load epicarray ChAMP methylationArrayAnalysis

7 months ago arisarkar88 ▴ 40

0

votes

5

replies

336

views

stattistics epicarray Epigenetics DMRcate

updated 5 weeks ago by James W. MacDonald 64k • written 5 weeks ago by Jitendra ▴ 10

4 results • Page 1 of 1

Recent ...

Replies

Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Comment: GOslim missing GO term by James W. MacDonald 64k

Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …

Comment: GOslim missing GO term by amanda • 0

For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…

Comment: GOslim missing GO term by James W. MacDonald 64k

What do you mean by 'enriched with ... GO terms from their correlations with clinical traits'? Are you doing a GO hypergeometric or somethi…

Comment: GOslim missing GO term by amanda • 0

I have multiple groups to compare with, and each enriched with hundreds of GO terms from their correlations with clinical traits (top1 pval…

Votes

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k