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Running limma in parallel
parallel
R
limma
EWAS
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
Lorenzo
• 0
0
votes
2
replies
845
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Illumina 450K quality controls with meffil
meffil
EWAS
methylation
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
uxue33
• 0
14
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12
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9.3k
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limma lmFit coefficients and p-values
limma
methylation
ewas
updated 7.7 years ago by
Steve Lianoglou
★ 13k • written 7.7 years ago by
CPR
▴ 30
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Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The U…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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