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Showing :
EnhancedVolcano
•
reset
1
vote
6
replies
21k
views
Log2FC data type error in EnhansedVolcano package
software error
enhancedvolcano
4.5 years ago
sauuyer
▴ 10
0
votes
8
replies
12k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2
pvalue
visualization
enhancedvolcano
rnaseq
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
ricardo3889
• 0
7
votes
8
replies
6.4k
views
Warning in EnhancedVolcano plot
volcano-plot
EnhancedVolcano
updated 2.9 years ago by
Kevin Blighe
★ 3.9k • written 3.0 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
4.7k
views
EnhancedVolcano Label Question
RNASeq
EnhancedVolcano
DEGs
updated 2.8 years ago by
Kevin Blighe
★ 3.9k • written 2.8 years ago by
robledoj13
• 0
5
votes
4
replies
4.7k
views
ylim and xlim in Enhanced Volcano
DESeq2
EnhancedVolcano
Bioconductor
updated 2.7 years ago by
Kevin Blighe
★ 3.9k • written 2.7 years ago by
Rachel
• 0
2
votes
6
replies
3.9k
views
How can I use geom_label_repel with EnhancedVolcano?
ggrepel
RNASeq
R
EnhancedVolcano
2.7 years ago
Loren
▴ 10
1
vote
4
replies
3.8k
views
EnhancedVolcano plot with colCustom
EnhancedVolcano
3.0 years ago
Neeraja Vegesna
▴ 10
6
votes
8
replies
3.5k
views
Jitter p-values in volcano plot
EnhancedVolcano
DESeq2
updated 3.4 years ago by
Michael Love
41k • written 3.5 years ago by
philipp.rewe
▴ 20
1
vote
8
replies
3.3k
views
Problem selectively labelling points in the Enhanced Volcano package
EnhancedVolcano
3.3 years ago
Peter
▴ 10
0
votes
20
replies
3.1k
views
pointSize, labSize, and DrawConnectors error when plotting EnhancedVolcano
EnhancedVolcano
3.6 years ago • updated 3.3 years ago
knholm
• 0
4
votes
2
replies
2.7k
views
enhancedVolcano: Why are only a few of my select labels showing up?
enha
EnhancedVolcano
3.5 years ago
noahhelton98
▴ 20
4
votes
7
replies
2.5k
views
visualize significant upregultaed genes and downregultaed genes with different colors (EnhancedVolcano)
enhancedvolcano
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.7 years ago by
gaom001
▴ 10
3
votes
5
replies
2.4k
views
Print EnhancedVolcano Plot as jpeg or similar in R Notebook
EnhancedVolcano
updated 23 months ago by
Kevin Blighe
★ 3.9k • written 23 months ago by
Bine
▴ 40
0
votes
6
replies
2.2k
views
How to change all text, including point labels to Arial?
EnhancedVolcano
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
junli1988
• 0
1
vote
1
reply
2.1k
views
Enhanced Volcano Plot Controlling Color Layers
EnhancedVolcano
3.0 years ago
dk0319
• 0
0
votes
1
reply
2.1k
views
Increase text size of axis labels in EnhancedVolcano
EnhancedVolcano
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
knholm
• 0
3
votes
5
replies
2.0k
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
camillab.
▴ 10
6
votes
9
replies
2.0k
views
How to better design a Volcano plot
EnhancedVolcano
updated 3.3 years ago by
Kevin Blighe
★ 3.9k • written 3.3 years ago by
suxxa
▴ 20
2
votes
4
replies
2.0k
views
EnhancedVolcano legendPosition error
EnhancedVolcano
updated 17 months ago by
elefth.pavlos
▴ 40 • written 17 months ago by
Allison
• 0
0
votes
5
replies
1.8k
views
EnhancedVolcano plot - labels
EnhancedVolcano
updated 2.6 years ago by
Kevin Blighe
★ 3.9k • written 2.6 years ago by
Johannes
• 0
1
vote
12
replies
1.7k
views
EnhancedVolcano - highlight specific points by changing shape
enhancedvolcano
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
n.tear
▴ 20
4
votes
5
replies
1.6k
views
EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
Transcriptomics
EnhancedVolcano
updated 12 months ago by
Kevin Blighe
★ 3.9k • written 12 months ago by
Peter
▴ 20
0
votes
1
reply
1.6k
views
Enhanced Volcano Error when drawing connectors
EnhancedVolcano
updated 18 months ago by
Kevin Blighe
★ 3.9k • written 18 months ago by
deena.maurer
• 0
1
vote
4
replies
1.6k
views
Issue with selectively labelling genes in the Enhanced Volcano package
EnhancedVolcano
updated 2.3 years ago by
Kevin Blighe
★ 3.9k • written 2.3 years ago by
Jonathan
▴ 10
0
votes
2
replies
1.5k
views
ERROR installing EnhancedVolcano in R4.1
EnhancedVolcano
updated 2.5 years ago by
Kevin Blighe
★ 3.9k • written 2.5 years ago by
Raj
• 0
1
vote
3
replies
1.5k
views
Enhancedvolcano labels superimposed on points
EnhancedVolcano
updated 2.3 years ago by
Kevin Blighe
★ 3.9k • written 2.3 years ago by
acharest
• 0
0
votes
5
replies
1.3k
views
Italicise
EnhancedVolcano
updated 22 months ago by
Kevin Blighe
★ 3.9k • written 23 months ago by
Pau
• 0
1
vote
1
reply
1.1k
views
Issue with lengthConnectors in EnhancedVolcano
EnhancedVolcano
updated 3 months ago by
mohamad.hajo89
• 0 • written 2.3 years ago by
ikotlar
▴ 10
0
votes
4
replies
1.0k
views
enhanced volcano , different -log10pvalue of the same gene
EnhancedVolcano
RNASeqData
DifferentialExpression
11 months ago
ruba-mahmoud
• 0
2
votes
2
replies
962
views
Overlay points with EnhancedVolcano R
EnhancedVolcano
updated 13 months ago by
Kevin Blighe
★ 3.9k • written 13 months ago by
redafazazi
• 0
0
votes
2
replies
918
views
Unable to over/ride colour scheme with custom key-value pairs
EnhancedVolcano
updated 18 months ago by
Kevin Blighe
★ 3.9k • written 18 months ago by
patrirodry85
• 0
0
votes
3
replies
841
views
change a column within a DESeq results object
EnhancedVolcano
updated 22 months ago by
Guido Hooiveld
★ 3.9k • written 22 months ago by
Matt
• 0
0
votes
2
replies
837
views
Is it possible for the legend labels to be different from the Colcustom names?
EnhancedVolcano
enha
17 months ago
elefth.pavlos
▴ 40
0
votes
3
replies
835
views
Enhanced volcanoplots from DESeq2
EnhancedVolcano
updated 4.1 years ago by
Michael Love
41k • written 4.1 years ago by
rimss.khurana
• 0
0
votes
0
replies
835
views
Plotting Upregulated and down regulated genes in different colour
EnhancedVolcano
2.2 years ago
Somenath
• 0
0
votes
0
replies
687
views
EnhancedVolcano, coloring of a subset of labels
EnhancedVolcano
2.4 years ago
bradyb
• 0
0
votes
2
replies
539
views
Only display positive FC on volcano plot
EnhancedVolcano
updated 13 months ago by
Kevin Blighe
★ 3.9k • written 13 months ago by
Tanner
• 0
0
votes
1
reply
479
views
Error in names(label_color[label_color == "organe"]) <- "lysosome" : 'names' attribute [1] must be the same length as the vector [0]
EnhancedVolcano
updated 12 months ago by
elefth.pavlos
▴ 40 • written 12 months ago by
Phương Thùy
• 0
0
votes
0
replies
455
views
MetaVolcanoR usage
limma
MetaVolcanoR
EnhancedVolcano
21 months ago
JAcky
• 0
0
votes
2
replies
415
views
EnhancedVolcano with labels based on log2 Fold Change
EnhancedVolcano
written 4 months ago by
sara.jacobson
• 0
40 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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