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EnrichGO
•
reset
2
votes
5
replies
3.1k
views
How to use EnrichGo of Cluster Profiler
EnrichGO
clusterProfiler
written 3.3 years ago by
Carolina
• 0
4
votes
2
replies
6.6k
views
How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
clusterprofiler
enrichGO
barplot
dotplot
5.7 years ago
MAP
• 0
0
votes
2
replies
918
views
ClusterProfiler: enrichResult table with genes that do not have GO-term
ClusterProfiler
enrichGO
updated 4.2 years ago by
James W. MacDonald
65k • written 4.2 years ago by
Reb
• 0
2
votes
10
replies
12k
views
keytype not supported in clusterprofiler when it is ensembl IDs?
clusterProfiler
enrichGO
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
kavator
▴ 30
2
votes
8
replies
1.6k
views
gene enrichment using enrichGO function throuth annotationHub orgDb
software error
enrichGO
annotationHub
clusterProfiler
Job
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
bnajafpour
• 0
1
vote
1
reply
1.6k
views
enrichGO results
clusterProfiler
enrichGO
21 months ago
Shakiba
• 0
0
votes
1
reply
9.2k
views
"No genes can be mapped...." using enrichGO in clusterProfiler
R
TAIR
clusterProfiler
enrichGO
Arabidopsis
updated 3.0 years ago by
Guido Hooiveld
★ 3.9k • written 3.0 years ago by
abby-s
• 0
0
votes
2
replies
1.5k
views
Too many genes in GO term after enrichGO
clusterProfiler
enrichGO
clusterPro
2.4 years ago
slimyMS
• 0
2
votes
2
replies
1.8k
views
Mapping nothing when doing Enrichment Analysis of the TAIR using enrichGO in R
enrichGO
2.9 years ago
dailing57
• 0
1
vote
1
reply
1.2k
views
clusterProfiler enrichGO under-represented term
clusterProfiler
enrichGO
6.5 years ago
Francois Marchildon
▴ 20
2
votes
15
replies
636
views
Problems with enrichGO
clusterProfiler
enrichGO
updated 9 weeks ago by
Michael Love
41k • written 10 weeks ago by
cinzia.spagnoli
• 0
0
votes
2
replies
1.7k
views
How to select a specific onthology after runing enrichGO for all 3 onthology
enrichGO
clusterprofiler
5.7 years ago
MAP
• 0
0
votes
0
replies
788
views
Simplify - clusterProfiler
RNASeq
simplify
clusterProfiler
enrichGO
simplifyEnrichment
19 months ago
estafana.t98
• 0
2
votes
2
replies
1.0k
views
Using clusterProfiler for depletion analysis
clusterProfiler
enrichGO
2.4 years ago
samsiljee
• 0
14 results • Page
1 of 1
Recent ...
Replies
Answer: Why p value inconsistent when using different number of pathway score?
by
ATpoint
★ 4.0k
Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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Robert Castelo
★ 3.2k
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James W. MacDonald
65k
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shepherl
3.8k
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BioinfGuru
▴ 30
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Gordon Smyth
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