Showing : EnrichGO • reset
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Too many genes in GO term after enrichGO
clusterProfiler enrichGO clusterPro
5 months ago slimyMS • 0
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Using clusterProfiler for depletion analysis
clusterProfiler enrichGO
6 months ago samsiljee • 0
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Mapping nothing when doing Enrichment Analysis of the TAIR using enrichGO in R
enrichGO
12 months ago dailing57 • 0
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"No genes can be mapped...." using enrichGO in clusterProfiler
R TAIR clusterProfiler enrichGO Arabidopsis
updated 12 months ago by ★ 3.2k • written 12 months ago by • 0
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How to use EnrichGo of Cluster Profiler
EnrichGO clusterProfiler
updated 16 months ago by • 0 • written 16 months ago by • 0
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3.1k
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keytype not supported in clusterprofiler when it is ensembl IDs?
clusterProfiler enrichGO
updated 2.1 years ago by 59k • written 2.1 years ago by ▴ 20
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gene enrichment using enrichGO function throuth annotationHub orgDb
software error enrichGO annotationHub clusterProfiler Job
updated 2.1 years ago by 59k • written 2.1 years ago by • 0
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ClusterProfiler: enrichResult table with genes that do not have GO-term
ClusterProfiler enrichGO
updated 2.3 years ago by 59k • written 2.3 years ago by • 0
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How to select a specific onthology after runing enrichGO for all 3 onthology
enrichGO clusterprofiler
3.8 years ago MAP • 0
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How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
clusterprofiler enrichGO barplot dotplot
3.8 years ago MAP • 0
1
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1
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770
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clusterProfiler enrichGO under-represented term
clusterProfiler enrichGO
4.6 years ago Francois Marchildon ▴ 20
11 results • Page 1 of 1
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Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res by Kazuna • 0
Dear Charles, I am so impressed the way you handled this! Thank you! Could you teach me how you created geneSets list? Did you use getgo()…
Answer: Fail to run RupRadar by sergisayolspuig ▴ 80
Hi Qingwei, dupRadar is using `Rsubread::featureCounts()` under the hood to count reads on features of the GTF. By default, `Rsubread::fea…
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0
Hi Michael, I performed Differential isoform expression analysis using Swish and have got some isoforms. I had previously performed the g…
Comment: CPM after RUVseq by James W. MacDonald 59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq by James W. MacDonald 59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Votes
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
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