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EnrichGO
•
reset
4
votes
2
replies
6.7k
views
How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
clusterprofiler
enrichGO
barplot
dotplot
5.7 years ago
MAP
• 0
2
votes
2
replies
1.1k
views
Using clusterProfiler for depletion analysis
clusterProfiler
enrichGO
2.4 years ago
samsiljee
• 0
2
votes
2
replies
1.8k
views
Mapping nothing when doing Enrichment Analysis of the TAIR using enrichGO in R
enrichGO
2.9 years ago
dailing57
• 0
2
votes
10
replies
12k
views
keytype not supported in clusterprofiler when it is ensembl IDs?
clusterProfiler
enrichGO
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
kavator
▴ 30
2
votes
8
replies
1.6k
views
gene enrichment using enrichGO function throuth annotationHub orgDb
software error
enrichGO
annotationHub
clusterProfiler
Job
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
bnajafpour
• 0
2
votes
5
replies
3.1k
views
How to use EnrichGo of Cluster Profiler
EnrichGO
clusterProfiler
written 3.3 years ago by
Carolina
• 0
2
votes
15
replies
646
views
Problems with enrichGO
clusterProfiler
enrichGO
updated 10 weeks ago by
Michael Love
41k • written 10 weeks ago by
cinzia.spagnoli
• 0
1
vote
1
reply
1.2k
views
clusterProfiler enrichGO under-represented term
clusterProfiler
enrichGO
6.6 years ago
Francois Marchildon
▴ 20
1
vote
1
reply
1.6k
views
enrichGO results
clusterProfiler
enrichGO
21 months ago
Shakiba
• 0
0
votes
1
reply
9.2k
views
"No genes can be mapped...." using enrichGO in clusterProfiler
R
TAIR
clusterProfiler
enrichGO
Arabidopsis
updated 3.0 years ago by
Guido Hooiveld
★ 3.9k • written 3.0 years ago by
abby-s
• 0
0
votes
2
replies
922
views
ClusterProfiler: enrichResult table with genes that do not have GO-term
ClusterProfiler
enrichGO
updated 4.2 years ago by
James W. MacDonald
65k • written 4.2 years ago by
Reb
• 0
0
votes
0
replies
793
views
Simplify - clusterProfiler
RNASeq
simplify
clusterProfiler
enrichGO
simplifyEnrichment
19 months ago
estafana.t98
• 0
0
votes
2
replies
1.7k
views
How to select a specific onthology after runing enrichGO for all 3 onthology
enrichGO
clusterprofiler
5.7 years ago
MAP
• 0
0
votes
2
replies
1.5k
views
Too many genes in GO term after enrichGO
clusterProfiler
enrichGO
clusterPro
2.4 years ago
slimyMS
• 0
14 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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