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Updating org.Sc.sgd.db, and integration with topGO
GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser
updated 11 months ago by ▴ 150 • written 11 months ago by • 0
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Not retrieving msigdb genesets
EnrichmentBrowser
3 months ago yao.xiaosai • 0
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Comment: Ascona Workshop “Biological systems: from first principles to data-​driven model by Wolfgang Huber 13k
Dear Liam, it's bi-annual, we just submitted a proposal. If it works out, it'll be in 2024, and as it looks now, in early September. Theme:…
Comment: IHW for multiple regression by Wolfgang Huber 13k
Indeed, for the two-sided t-test (and similar), the sign of the test statistic is independent of the p-value under the null hypothesis, and…
Comment: edgeR supports continuous covariates? by Jeffcgen2000 • 0
Hi Yunshun Chen and Gordon Smyth, does edgeR support mixed model? (https://en.wikipedia.org/wiki/Mixed_model)
Comment: find tandem repeats in DNA by me-nobody • 0
OK. Thank you very much!
Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Bernardo • 0
Discussion for this question continuing on Biostars: https://www.biostars.org/p/9552419/
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A: edgeR: exactTest, glmFIt or glmQLFit approach?
Answer: on which data type limma::removeBatchEffect can be applyed?
C: WGCNA: Understanding module-trait correlations
A: WGCNA: Understanding module-trait correlations
A: Differential expression analysis starting from TPM data
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Popular Question to Gordon Smyth 47k
Scholar to elefth.pavlos ▴ 30
Popular Question to ruben.drews • 0
Student to luca.s ▴ 40
Commentator to Guido Hooiveld ★ 3.5k
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