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Ensembl
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News:
Ensembl 111 has been released
Ensembl
biomaRt
11 weeks ago
Benjamin
▴ 30
3
votes
2
replies
367
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
4 months ago
henrydionne
▴ 10
1
vote
2
replies
552
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
8 months ago
Miguel
• 0
7
votes
32
replies
5.1k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 5 weeks ago by
Emmi
• 0 • written 5.4 years ago by
Guido Hooiveld
★ 3.9k
0
votes
2
replies
968
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt
ensembldb
RNA
ensembl
updated 11 months ago by
Johannes Rainer
★ 2.0k • written 12 months ago by
Christopher
• 0
7
votes
5
replies
6.6k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 5 months ago by
Ke
• 0 • written 23 months ago by
kieran.short
▴ 40
9
votes
11
replies
5.5k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 16 days ago by
shepherl
3.8k • written 2.2 years ago by
jon.klonowski
▴ 40
2
votes
4
replies
1.6k
views
make TxDb from list of genes
R
maketxdbfrombiomart
maketxdbfromgranges
rstudio
ensembl
updated 11 months ago by
Shreyash
• 0 • written 5.3 years ago by
rtwest
• 0
8 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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