Showing : Ensembl • reset
0
votes
6
replies
187
views
Getting paralogus genes from biomart for mouse
biomart biomaRt Ensembl
updated 7 weeks ago by 3.4k • written 7 weeks ago by • 0
0
votes
2
replies
297
views
News: Ensembl 103 has been released
biomaRt ensembldb Ensembl ensemblVEP Biomart
7 months ago • updated 4 months ago mchakiachvili ▴ 10
4
votes
8
replies
3.1k
views
Ensembl site unresponsive
ensembl biomart
updated 5 months ago by • 0 • written 11 months ago by ▴ 30
1
vote
3
replies
514
views
Convert mouse gene ids to hamster gene ids
biomart R ensembl
updated 5 months ago by 3.4k • written 14 months ago by • 0
2
votes
11
replies
1.7k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 7 months ago by ★ 5.1k • written 12 months ago by • 0
5
votes
10
replies
989
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 8 months ago by ★ 1.9k • written 2.8 years ago by ★ 3.0k
1
vote
1
reply
199
views
topGO question
Ensembl ensembldb
updated 9 months ago by 58k • written 9 months ago by • 0
0
votes
0
replies
201
views
News: Ensembl 102 has been released
Ensembl biomaRt BioMar ensembldb
9 months ago mchakiachvili ▴ 10
4
votes
17
replies
697
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 12 months ago by 3.4k • written 12 months ago by ▴ 10
0
votes
1
reply
321
views
News: Ensembl 101 hase been released
Ensembl BioMart News
13 months ago mchakiachvili ▴ 10
1
vote
0
replies
265
views
News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl annotation ensembldb News
16 months ago Johannes Rainer ★ 1.9k
1
vote
0
replies
180
views
News: Ensembl 100 has been released
biomart ensembl e100 mart news News
16 months ago Thomas Maurel ▴ 790
0
votes
4
replies
206
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon tximport tximportdata ensembl
updated 17 months ago by 34k • written 17 months ago by • 0
1
vote
2
replies
571
views
getBM biomart ensembl Error report
biomaRt ensembl
updated 17 months ago by ★ 5.1k • written 17 months ago by • 0
0
votes
1
reply
329
views
ChIPSeeker with Ensembl IDs
chipseeker Ensembl EnsDb.Mmusculus.v79 ensembldb
17 months ago Assa Yeroslaviz ★ 1.5k
0
votes
2
replies
203
views
Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart mart ensembl
updated 17 months ago by 58k • written 17 months ago by • 0
0
votes
0
replies
122
views
News: Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt Ensembl News
19 months ago Astrid_Ensembl • 0
4
votes
4
replies
235
views
biomaRt getSequence fails with genomic coordinates
biomart getSequence genomic coordinates ENSEMBL bug report
updated 19 months ago by ★ 5.1k • written 19 months ago by ▴ 10
0
votes
1
reply
109
views
Question regarding retrieving miRNA sequences from ENSEMBLE
ensembl
updated 20 months ago by 34k • written 20 months ago by • 0
0
votes
0
replies
193
views
News: Ensembl 99 has been released and renaming of species
biomart ensembl e99 mart news News
20 months ago Thomas Maurel ▴ 790
4
votes
11
replies
457
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 21 months ago by ★ 2.7k • written 21 months ago by ▴ 10
1
vote
3
replies
842
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub Ensembl Mouse AnnotationHub Ensembl
21 months ago dmgatti ▴ 10
0
votes
14
replies
381
views
Error while opening Mart with biomaRt package
software error ensembl biomart
21 months ago loicborcard01 • 0
0
votes
6
replies
248
views
Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl biomaRt
updated 23 months ago by ★ 5.1k • written 23 months ago by ▴ 850
0
votes
7
replies
729
views
BioMart does not find mouse homologs of human genes
biomart homolog ortholog gene conversion ensembl
updated 23 months ago by 58k • written 23 months ago by ▴ 30
0
votes
0
replies
261
views
News: Ensembl 98 has been released and renaming of species
biomart ensembl e98 mart News
24 months ago Thomas Maurel ▴ 790
0
votes
1
reply
219
views
Eliminate redundancy in biomaRt (2.38.0) query
biomaRt Ensembl
updated 2.1 years ago by ★ 5.1k • written 2.1 years ago by • 0
0
votes
3
replies
365
views
external_gene_id attribute removed from new biomaRt version
biomaRt Ensembl Ensemblplants
2.2 years ago Didi ▴ 10
1
vote
0
replies
311
views
News: ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation ensembldb Ensembl News
2.2 years ago Johannes Rainer ★ 1.9k
1
vote
0
replies
254
views
News: Ensembl 97 has been released
biomart ensembl e97 News
2.2 years ago James Allen ▴ 10
10
votes
8
replies
927
views
Best alternative annotation package to BiomaRt
R biomaRt Ensembl rnaseq
2.2 years ago m93 ▴ 10
0
votes
1
reply
327
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart ensembl R Bioconductor
2.2 years ago lbuo • 0
0
votes
4
replies
579
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 2.2 years ago by ★ 5.1k • written 2.2 years ago by • 0
3
votes
2
replies
369
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart geo software error ensembl
updated 2.3 years ago by ★ 5.1k • written 2.3 years ago by ▴ 10
1
vote
1
reply
290
views
Gene biotype for a given symbol
ensembl
updated 2.3 years ago by ★ 1.9k • written 2.3 years ago by • 0
1
vote
3
replies
766
views
Scan error using biomart getBM with version option and host set
biomart ensembl getbm
2.3 years ago Marc Saric ▴ 70
2
votes
0
replies
317
views
News: ensembl 96 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
updated 2.4 years ago by • 0 • written 2.4 years ago by 2.8k
6
votes
5
replies
1.7k
views
biomaRt Ensembl gene ID to multiple HGNC symbol
ensembl symbol hgnc biomart
updated 2.4 years ago by 58k • written 2.4 years ago by ▴ 80
0
votes
0
replies
279
views
News: Ensembl 96 has been released
ensembl biomart biomaRt e96 news News
2.4 years ago amonida ▴ 20
4
votes
5
replies
579
views
Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens.UCSC.hg19.knownGene
ensembl cdschrom org.Hs.eg.db AnnotationDbi SingleCellExperiment
updated 2.5 years ago by 58k • written 2.5 years ago by ▴ 10
0
votes
0
replies
359
views
News: ensembl 95 gtfs and fasta twobits have been added to AnnotationHub
annotationhub annotationdata ensembl gtf 2bit News
2.6 years ago shepherl 2.8k
0
votes
1
reply
425
views
News: Ensembl 95 has been released
ensembl biomart biomaRt e95 News
2.7 years ago Thomas Maurel ▴ 790
2
votes
3
replies
451
views
make TxDb from list of genes
R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl
2.8 years ago rtwest • 0
2
votes
1
reply
483
views
Ensemble and Entrez disconnected?
ensembl entrez biomart org.hs.eg.db
updated 2.8 years ago by 58k • written 2.8 years ago by • 0
0
votes
1
reply
411
views
Pick coding vs non-coding from Ensembl data set
R ensembl ensembldb noncoding rna protein coding
updated 2.8 years ago by ★ 1.9k • written 2.8 years ago by • 0
3
votes
6
replies
782
views
biomaRt: Ensembl -> Entrez conversion error?
biomart entrez gene identifiers ensembl conversion
updated 2.8 years ago by ★ 5.1k • written 2.8 years ago by ▴ 10
0
votes
3
replies
614
views
DESeq2: removal of duplicated genes during statistical analysis
deseq2 gene symbol ensembl
updated 2.8 years ago by 34k • written 2.8 years ago by ▴ 10
2
votes
3
replies
589
views
Problem for finding "Locus Link ID" from Annotation file
wgcna package TCGA LocusLinkID genecode ensembl
updated 2.9 years ago by 58k • written 2.9 years ago by ▴ 10
1
vote
7
replies
492
views
News: ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
2.9 years ago shepherl 2.8k
1
vote
1
reply
468
views
News: Ensembl 94 has been released
biomart release ensembl ensembl94 ensemblmart News
3.0 years ago Thomas Maurel ▴ 790
50 results • Page 1 of 1
Recent ...
Replies
Answer: Effect size using likelihood ratio test in DESeq2 by ATpoint ▴ 830
The thing with time-courses is that you do not necessarily have binary patterns of gene expression changes being only up-or downregulated. …
Answer: Undefined columns error R cytometry analysis by Jiang, Mike ★ 1.3k
I see you are trying to fill the missing transform info to `gs_bcell_auto` , which is a hack, but since you seems to know what you are doin…
Comment: how to get MFI stats from data by Jiang, Mike ★ 1.3k
Can you grant the public caccess to you fcs to reproduce your issue?
Answer: Getting a dataset that only contains the flow data within the gated area by Jiang, Mike ★ 1.3k
You didn't post your example code, so here is my best guess of your workflow > library(flowCore) > library(flowWorkspace) …
Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
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Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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