Bioconductor Ensembldb

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5.5k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 15 days ago by Shiva • 0 • written 5.4 years ago by Guido Hooiveld ★ 3.9k

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148

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ensembldb transcriptome genome coordinateconversion

updated 18 days ago by Michael Love 41k • written 21 days ago by saadmurtazakhan ▴ 10

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200

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TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus

updated 9 weeks ago by James W. MacDonald 65k • written 9 weeks ago by ramonmassoni ▴ 10

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282

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ensembldb genomei GenomeInfoDb

10 weeks ago Kai Hu ▴ 70

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205

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ensembldb biomaRt

updated 9 weeks ago by Robin • 0 • written 10 weeks ago by Pez ▴ 10

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473

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Rstudio cDNA ensembldb NCBI

4 months ago R_Page • 0

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737

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RStudio convert ensembldb NCBI

5 months ago j_denton • 0

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526

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GO ensembldb

6 months ago • updated 5 months ago Rockbar • 0

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812

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AnnotationHubSoftware ensembldb

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by cjag • 0

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4.0k

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biomaRt ensembldb UniProt.ws

updated 6 months ago by Marcel Ramos 690 • written 20 months ago by Recep ▴ 20

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1.3k

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ensembldb

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by Max ▴ 10

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469

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Rsubread ensembldb

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by Ya • 0

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1.4k

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ensembldb biomaRt

updated 9 months ago by Michael Love 41k • written 9 months ago by Benjamin ▴ 30

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2.5k

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ensembldb SNP SNPData genomes

written 2.2 years ago by Weiqiong • 0

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5.7k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 5 weeks ago by shepherl 3.8k • written 2.2 years ago by jon.klonowski ▴ 40

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942

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Annotation biomaRt ensembldb

written 2.4 years ago by Lillian • 0

16 results • Page 1 of 1

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Comment: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia) by christianhilton64 • 0

I'm less familiar with the specifics of GSVA, but I'm curious about the overall goal of this analysis. Could you provide a high-level summa…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k