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EpicV2
•
reset
0
votes
0
replies
231
views
DMRcate pcutoff setting
EpicV2
DMRcate
4 months ago
kitzhu
• 0
2
votes
7
replies
1.9k
views
Annotation for EPICv2
EpicV2
ChAMPdata
updated 3 months ago by
icecreamlover
• 0 • written 4 months ago by
nurkenber
• 0
1
vote
3
replies
1.2k
views
SeSAMe DMR for EPIC V2
sesame
EPICv2manifest
epicv2
7 months ago
luca.s
▴ 50
0
votes
2
replies
788
views
Combining analysis of EPICv1 and EPICv2 using SeSAMe package
sesameData
EPICv2
EPICv1
updated 4 months ago by
zhouwanding
▴ 20 • written 8 months ago by
archibold.mposhi
• 0
3
votes
2
replies
848
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 8 months ago by
Gordon Smyth
52k • written 9 months ago by
Kim
• 0
1
vote
3
replies
1.7k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
11 months ago • updated 4 months ago
s.malik
• 0
0
votes
4
replies
1.6k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
rae.alshammari
▴ 10
0
votes
4
replies
2.5k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 3 months ago by
icecreamlover
• 0 • written 13 months ago by
ChunkyJones
• 0
2
votes
5
replies
1.6k
views
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame
IlluminaHumanMethylationEPICv2anno.20a1.hg38
methylationEPICv2.0
EpicV2
updated 10 months ago by
aldea85
• 0 • written 15 months ago by
Courtney
• 0
0
votes
6
replies
2.8k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 17 months ago by
Zuguang Gu
▴ 290 • written 18 months ago by
Izabela.ams
• 0
1
vote
9
replies
3.1k
views
Error using champ.import
ChAMP
EPICv2
updated 3 months ago by
Ricky
• 0 • written 19 months ago by
medha.suman
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell
by
James W. MacDonald
68k
Put it in a list and put the list in a column.
Comment: For some reason I can't update BiocManager to 3.20
by
James W. MacDonald
68k
Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …
Comment: p-value the same for different contrasts DESeq2
by
caroline.zanchi
• 0
It would be great if it were possible to do something similar using GlmGamPoi !
Comment: Web accessibility of Bioconductor.org
by
Sean Davis
21k
Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304
Votes
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
A: Rtracklayer fails to export TxDb as GFF3 without CDS
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