Showing : Epigenetics • reset
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edgeR - multiple comparisions
Epigenetics GO edgeR Epigenetics GO edgeR
updated 13.6 years ago by ▴ 320 • written 13.6 years ago by ▴ 260
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Job: Bioinformatics Scientist position at Johns Hopkins
R USA Hopkins GI Cancer Epigenetics Job
8.8 years ago asharm37 • 0
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2
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2.5k
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pd.hugene.1.0.st.v1
Epigenetics Annotation oligo Epigenetics Annotation oligo
updated 15.5 years ago by ★ 4.3k • written 15.5 years ago by ★ 1.1k
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error in RnBeads installation
Epigenetics RnBeads R
2.9 years ago • updated 2.8 years ago Jitendra ▴ 10
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2
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Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC arrays limma minfi Epigenetics
updated 4.2 years ago by 52k • written 4.2 years ago by ▴ 20
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job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics Infrastructure Epigenetics Infrastructure
11.0 years ago Holger Klein ▴ 20
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qPCR Events and 30% Discount on qPCR workshops
miRNA qPCR Epigenetics GO Visualization Network probe microRNA miRNA qPCR Epigenetics
15.2 years ago qPCR Platform - the reference in real-t… ▴ 170
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4 PhD positions in cancer computational biology
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
13.4 years ago mattia pelizzola ▴ 200
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1.9k
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Bioinformatics Positions, National Cancer Centre Singapore
Microarray Epigenetics Cancer Microarray Epigenetics Cancer
16.7 years ago Julian Lee ▴ 140
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1.9k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 7.8 years ago by ▴ 60 • written 8.0 years ago by ▴ 120
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Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
9.1 years ago Yassen Assenov ▴ 10
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1.9k
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News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
8.2 years ago • updated 8.0 years ago Yuan Tian ▴ 90
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ChAMP: Error using champ.norm() function
ChAMP methylation epigenetics
9.2 years ago jdangelo • 0
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
15.5 years ago Joern Toedling ▴ 450
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1.8k
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
17.0 years ago Jean Yee Hwa Yang ▴ 130
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1.7k
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Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing Epigenetics PROcess Sequencing Epigenetics PROcess
10.7 years ago Brian Herb ▴ 80
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1.6k
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
2.6 years ago Jitendra ▴ 10
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[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
13.4 years ago stefano iacus ▴ 430
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News: ChAMP2 is online
epigenetics EPIC 450K ChAMP News
8.3 years ago Yuan Tian ▴ 90
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IS PROGRAMMER/ANALYST I / 40 HOUR / DAY / BWH - CHANNING LABORATORY
Epigenetics Annotation Network Epigenetics Annotation Network
12.9 years ago Guest User ★ 13k
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[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
11.9 years ago stefano iacus ▴ 430
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3
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1.6k
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batch effect in EPIC array data
statistics Epigenetics R
updated 23 months ago by ▴ 760 • written 23 months ago by ▴ 10
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3
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1.5k
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how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?
Epigenetics cdf Epigenetics cdf
updated 13.1 years ago by 67k • written 13.1 years ago by ▴ 30
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Position Assistant Professor Bioinformatics
Epigenetics Epigenetics
13.3 years ago Martin Zenke ▴ 10
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sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
16.1 years ago Dick Beyer ★ 1.4k
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Bioinformatics positions
Microarray Genetics Proteomics Epigenetics Microarray Genetics Proteomics Epigenetics
17.2 years ago French, Jef NIH/NIEHS ▴ 30
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1.4k
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Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
16.5 years ago Martin Morgan 25k
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1.4k
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Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.1 years ago by ▴ 140 • written 16.1 years ago by 67k
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Head of Junior Research Group - Bioinformatics
Epigenetics Epigenetics
13.4 years ago Qiong Lin ▴ 10
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DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
15 months ago Jitendra ▴ 10
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Bioinformatics postdoc in Brussels
Sequencing Epigenetics Cancer Breast Sequencing Epigenetics Cancer Breast
15.8 years ago Vincent Detours ▴ 80
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1.3k
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Fwd: biomaRt column order
Epigenetics biomaRt Epigenetics biomaRt
16.5 years ago steffen@stat.Berkeley.EDU ▴ 600
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Job: PhD computational position - Milan
epigenetics transcription computational biology Job
7.5 years ago mattia pelizzola ▴ 200
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Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
5.8 years ago firestar ▴ 20
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browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
16.0 years ago Michael Lawrence ▴ 620
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
4.9 years ago Shamith.Samarajiwa ▴ 180
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[ Re: Fwd: biomaRt column order]
Epigenetics biomaRt Epigenetics biomaRt
16.5 years ago steffen@stat.Berkeley.EDU ▴ 600
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Job: Postdoctoral Fellow in Epigenomcis/Neurobiology (MGH/Harvard Medical School, Boston)
GenomicVariation SingleCell Autism Neurogenesis Epigenetics
2.3 years ago • updated 2.2 years ago sudhir.thakurela • 0
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Job: Bioinformatics Research Scientist- Epigenetics Group
HiC Epigenetics HiCHIP ChIPSeq
2.6 years ago xubeisi • 0
0
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955
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Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
5.8 years ago firestar ▴ 20
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error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 14 months ago by 67k • written 14 months ago by ▴ 10
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925
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.8 years ago Jitendra ▴ 10
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0
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850
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Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
2.2 years ago whduke • 0
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0
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763
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How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
22 months ago Jitendra ▴ 10
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4
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limma with interaction term
R biostatistics limma Epigenetics
11 months ago • updated 10 months ago Jitendra ▴ 10
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0
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739
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normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
2.8 years ago Jitendra ▴ 10
0
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0
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661
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combat for batch effect correction in EPIC array data
Epigenetics combat EPIC
22 months ago Jitendra ▴ 10
0
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0
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612
views
rnbeads inference
epigenetics RnBeads
23 months ago Jitendra ▴ 10
1
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1
reply
566
views
Further analysis after limma regression output
statistics Epigenetics limma
updated 15 months ago by 67k • written 15 months ago by ▴ 10
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Job: Postdoctoral position in Computational Epigenomics of Aging and Cancer
Aging Epigenetics JobPosting Postdoctor Cancer
8 weeks ago xiaolong • 0
50 results • Page 1 of 1
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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue by k.panov • 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: MBDseq analysis using qsea package by Lukas ▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts by sindhuri • 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k
Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…
Votes
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
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Popular Question to Gordon Smyth 52k
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