Bioconductor Epigenomics

Showing : Epigenomics • reset

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846

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methylation epigenomics slurm mpi methylmix

updated 3.7 years ago by Kevin Blighe ★ 3.9k • written 3.7 years ago by parra.sev ▴ 20

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929

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cancer networks genomics epigenomics Job

4.4 years ago • updated 4.3 years ago marschaefer • 0

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902

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bioinformatician job epigenomics hts Job

5.4 years ago mattia pelizzola ▴ 200

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1.3k

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microbiome epigenomics bioinformatics analyst NGS Job

6.1 years ago Jenny Drnevich ★ 2.0k

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1.3k

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job bioinformatics microbiome metagenomics epigenomics Job

6.2 years ago Jenny Drnevich ★ 2.0k

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1.1k

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epigenomics RNA methylation RNA dynamics chromatin computational biology Job

6.3 years ago mattia pelizzola ▴ 200

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2.9k

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ChAMP methylationepic epicarray epigenomics

updated 6.6 years ago by rcavalca ▴ 140 • written 6.6 years ago by karthikrpad ▴ 10

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4.4k

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AnnotationHub Epigenomics BigData RoadMap Project NIH Tutorial

updated 7.0 years ago by vanesa_1230 • 0 • written 8.9 years ago by Sonali Arora ▴ 390

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1.5k

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conference transcription epigenomics visualization infrastructure News

7.8 years ago Matthew Ritchie ▴ 1000

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1.3k

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roadmap project annotationhub epigenomics big data

updated 8.0 years ago by Valerie Obenchain ★ 6.8k • written 8.0 years ago by kevin.rue ▴ 350

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1.7k

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rnaseq single cell bioinformatics R epigenomics Job

8.5 years ago Garry Myers • 0

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1.7k

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sequencing transcription epigenomics visualization infrastructure News

8.8 years ago • updated 8.7 years ago Matthew Ritchie ▴ 1000

12 results • Page 1 of 1

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Comment: Error in champ.load(): The following specified files do not exist by Sherin • 0

it worked! thank you so much!!

Comment: Multi factor design edgeR/Deseq2 by Elizabeth • 0

Sorry I realise this thread is ancient, but I'm wondering why it's ok to remove the last column from the design matrix? Also, why this desi…

Comment: DESeq2 setting significant p-value by Michael Love 41k

It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.

Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Votes

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Comment: Reading huge bismark coverage files using bbseq::read.bismark

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