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Answer: edgeR::cpm() results in negative values from raw counts of 0
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The function, when `log = TRUE` adds a small prior count to the counts before taking the log, avoiding taking the log of 0. If that prior i…
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It's calculated exactly how you might expect (it's called counts/million counts for a reason).
```
> y <- matrix(rnbinom(20,size=1,mu=…
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Thanks for posting this Kinnary. See also https://github.com/LieberInstitute/spatialLIBD/issues/106 for more details on the background.
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