Showing : Error • reset
2
votes
9
replies
22k
views
DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
deseq2 error
updated 3.5 years ago by 43k • written 7.7 years ago by ▴ 60
3
votes
4
replies
16k
views
converting ensembl transcript ID to ensemble gene: problem & missing values
biomart error ensembldb
7.1 years ago Yuqia • 0
12
votes
10
replies
14k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 12 months ago by • 0 • written 17 months ago by ▴ 20
2
votes
4
replies
10k
views
Limma LmFit() giving error: Error in lm.fit(design, t(M)) : incompatible dimension
limma differential expression design matrix error eset
updated 9.7 years ago by ★ 28k • written 9.7 years ago by ▴ 20
0
votes
6
replies
9.3k
views
Rhtslib - install error
Rhtslib installation error zlib
updated 5.5 years ago by • 0 • written 6.4 years ago by • 0
1
vote
4
replies
7.3k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler input files error help
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by • 0
5
votes
5
replies
7.1k
views
DESeq2 "DESeqDataSetFromMatrix" function has started to give me an error
deseq2 error
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 30
10
votes
5
replies
6.9k
views
Error: This function only works when used with the ensembl BioMart.
biomart error
9.4 years ago • updated 9.3 years ago anchel.gonzalez • 0
2
votes
11
replies
6.8k
views
DESeq2 error in evaluating the argument 'args' in selecting a method for function 'do.call'
deseq2 error
updated 9.6 years ago by 43k • written 9.6 years ago by ▴ 10
0
votes
7
replies
6.7k
views
DESeq estimateSizeFactors() is returning error "Error: all(!is.na(value)) is not TRUE"
deseq2 error R estimatesizefactors zero
updated 3.0 years ago by • 0 • written 7.5 years ago by • 0
0
votes
0
replies
6.6k
views
maSigPro error PlotGroups [Error: (list) object cannot be coerced to type 'double']
masigpro error PlotGroups
7.8 years ago nicolas.descostes ▴ 20
1
vote
3
replies
6.0k
views
Error in cleanContrast
deseq2 r error
updated 8.3 years ago by 43k • written 8.3 years ago by • 0
1
vote
2
replies
5.4k
views
ICU init failed: U_FILE_ACCESS_ERROR while loading library "VariantAnnotation"
variantannotation library error
updated 9.6 years ago by ★ 6.8k • written 9.6 years ago by ▴ 50
0
votes
6
replies
5.0k
views
Error in getOneSeqFromBSgenomeMultipleSequences During singeR tutorial
error
5.8 years ago dfcarril • 0
3
votes
11
replies
4.8k
views
GEOquery http:// url error
geoquery error getgeo microarray geo
updated 7.2 years ago by 21k • written 8.0 years ago by • 0
2
votes
3
replies
4.8k
views
Error in DESeqDataSetFromMatrix
deseq2 error
8.5 years ago lauren.fitch • 0
2
votes
5
replies
4.7k
views
GDCdownload does not work
GDCdow tcgabiolinks error tcgadownload download_error
updated 6.3 years ago by ▴ 260 • written 6.3 years ago by • 0
0
votes
1
reply
4.6k
views
ERROR: lazy loading failed for package ‘org.Hs.eg.db’
org.hs.eg.db annotationdbi error
updated 9.9 years ago by ★ 8.2k • written 9.9 years ago by • 0
0
votes
1
reply
4.6k
views
preprocessCore problem: normalize.quantiles error
preprocesscore error normalization
updated 9.7 years ago by ▴ 760 • written 9.7 years ago by ▴ 10
0
votes
6
replies
4.5k
views
Error in using Pathview package. Do not print the pathways provided by GAGE analysis
gage pathview error
updated 8.8 years ago by ★ 1.6k • written 8.8 years ago by • 0
4
votes
9
replies
4.4k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 3.8 years ago by ★ 6.6k • written 4.1 years ago by ▴ 20
3
votes
14
replies
4.4k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart error ensembl bioconductor ensembl mart
7.8 years ago daniel.carbajo • 0
0
votes
17
replies
4.3k
views
What causes this DESeq2 error at "fitting model and testing"?
deseq2 differential expression error
updated 21 months ago by • 0 • written 7.5 years ago by • 0
3
votes
2
replies
4.2k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2 results error
7.4 years ago hs.lansdell ▴ 20
1
vote
6
replies
4.1k
views
failed to load 'AnnotationHub' resource
annotationhub annotation error
9.3 years ago elhananby ▴ 10
0
votes
3
replies
4.1k
views
Error when constructing DESeqDataSetFromMatrix (Error in round(assay(se)): non-numeric argument to mathematical function)
deseq2 R error
updated 7.0 years ago by 43k • written 7.0 years ago by • 0
6
votes
6
replies
3.9k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound)
Gostats go term annotation drosophila melanogaster error
updated 8.1 years ago by ▴ 10 • written 8.8 years ago by ▴ 300
0
votes
2
replies
3.8k
views
Error using TCGAbiolinks "Error in fix.by(by.y, y) : 'by' must specify a uniquely valid column"
TCGA tcgabiolinks Error
7.8 years ago f.geist ▴ 20
0
votes
4
replies
3.8k
views
GEOquery: Error Message
geoquery error
updated 9.6 years ago by ▴ 10 • written 9.7 years ago by ▴ 130
0
votes
1
reply
3.7k
views
"Package which is only available in source form, and may need compilation of C/C++/Fortran"
networkBMA error
7.7 years ago milenamagalhaes • 0
2
votes
3
replies
3.6k
views
DESeq2- preliminary study no replicates
deseq2 replicates error DESeqDataSetFromMatrix
updated 6.0 years ago by 43k • written 6.0 years ago by • 0
0
votes
7
replies
3.6k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 16 months ago by 68k • written 16 months ago by • 0
1
vote
2
replies
3.5k
views
error in DESeq2 results(dds)
DESeq2 datasetfrommatrix results error
4.1 years ago james • 0
3
votes
4
replies
3.5k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error mac DESeq2 GenomeInfoDb R
4.2 years ago • updated 4.1 years ago Dan ▴ 20
0
votes
17
replies
3.4k
views
Issue with easyRNASeq
easyRNASeq error
9.7 years ago ea11g0 • 0
0
votes
5
replies
3.4k
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function assayNames for signature "DESeqDataSet"
deseq2 error
updated 8.8 years ago by 43k • written 8.8 years ago by ▴ 300
0
votes
7
replies
3.4k
views
BiocInstaller wants version of R that is not available yet
bioconductor error biocinstaller package installation install
updated 8.4 years ago by 25k • written 8.4 years ago by • 0
0
votes
8
replies
3.2k
views
tximport command error
tx2gene txi error
updated 5.9 years ago by 68k • written 5.9 years ago by • 0
5
votes
7
replies
3.2k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 6.9 years ago by 68k • written 6.9 years ago by ▴ 20
0
votes
8
replies
3.1k
views
Error in simpleLoess when running DEXSeq
DEX error simpleLoess RNAseq
updated 10.5 years ago by ★ 1.9k • written 10.5 years ago by ▴ 10
0
votes
14
replies
3.1k
views
annFUN error TOPGO
TOPGO annFUN error
updated 5.0 years ago by ★ 4.0k • written 5.0 years ago by • 0
0
votes
3
replies
3.0k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
7.8 years ago mszskb • 0
0
votes
3
replies
2.9k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
0
votes
2
replies
2.9k
views
gcrma error " 'Calloc' could not allocate memory"
gcrma error
updated 7.4 years ago by 68k • written 7.4 years ago by • 0
1
vote
7
replies
2.8k
views
Error message from updated DESeq2
deseq2 beta prior error
9.4 years ago asaferali • 0
1
vote
6
replies
2.8k
views
GoSeq SupportedGenomes error
goseq unsupported organisms supportedgenomes supportedorganisms error
updated 8.1 years ago by 52k • written 8.1 years ago by • 0
0
votes
3
replies
2.8k
views
Problems to create GmapGenome - gmapR
gmapR GmapGenome error create
9.9 years ago • updated 9.8 years ago lelemraposo ▴ 10
2
votes
2
replies
2.7k
views
TCGAbiolinks Download ERROR
TCGA tcgabiolinks download error
updated 7.4 years ago by ▴ 40 • written 7.4 years ago by ▴ 10
0
votes
3
replies
2.7k
views
incorrect biomaRt output order of gene list
biomart ensembldb error
7.1 years ago Yuqia • 0
0
votes
2
replies
2.6k
views
unused argument (organism="human")
error
updated 8.5 years ago by ▴ 450 • written 8.5 years ago by • 0
50 results • Page 1 of 1
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Comment: Annotation package for Manduca sexta by GA ▴ 10
Thank you!
Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k
If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k
Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Votes
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
A: Is logFC a log2 fold change or some other base in scran::findMarkers
Comment: Error in retrieving clinical data
What is the cheapest day to fly on American Airlines? {Ask_Expert}
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