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10
votes
10
replies
5.6k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 6 days ago by
juo5
• 0 • written 5 months ago by
Abhishek
▴ 10
0
votes
8
replies
1.1k
views
fail to annotate chromosome data to single cell object
error
SingleCell
annotate
updated 4 months ago by
yw24418
• 0 • written 12 months ago by
sandra.garces.19
• 0
0
votes
7
replies
1.4k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error
RStudio
ggplot2
DESeq2
updated 4 months ago by
James W. MacDonald
65k • written 4 months ago by
BioES
• 0
0
votes
0
replies
254
views
proActiv - Error in estimateSizeFactorsForMatrix when using the proActiv function
proActiv
error
estimateSizeFactorsForMatrix
5 months ago
Chris
• 0
0
votes
1
reply
340
views
Problems when running GDC_prepare in R
TCGAbiolinks
error
GDC_prepare
5 months ago
leon
• 0
0
votes
3
replies
547
views
DiffBind issue with edgeR$bTagwise and DESeq2$fitType
Config
DiffBind
Error
updated 8 months ago by
Rory Stark
★ 5.1k • written 8 months ago by
jason.kost
• 0
0
votes
17
replies
3.3k
views
What causes this DESeq2 error at "fitting model and testing"?
deseq2
differential expression
error
updated 9 months ago by
snow34
• 0 • written 6.5 years ago by
ap3637
• 0
0
votes
1
reply
430
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB
easyrun
error
mm10
Mus_musculus_Data
updated 10 months ago by
James W. MacDonald
65k • written 10 months ago by
Esraa
• 0
0
votes
0
replies
446
views
Are LFQ workflow arguments from DEP package all required or optional?
LFQ
R
DEP
error
11 months ago
aymanreffai
• 0
9 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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