Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Error
•
reset
10
votes
5
replies
6.5k
views
Error: This function only works when used with the ensembl BioMart.
biomart
error
8.9 years ago
anchel.gonzalez
• 0
0
votes
6
replies
2.0k
views
BiSeq trimClusters error
biseq
error
trimClusters
updated 8.7 years ago by
Katja Hebestreit
▴ 130 • written 8.7 years ago by
kms68
• 0
0
votes
6
replies
8.6k
views
Rhtslib - install error
Rhtslib
installation
error
zlib
updated 5.1 years ago by
leoadam014
• 0 • written 6.0 years ago by
boboshaq
• 0
3
votes
4
replies
1.9k
views
seq2pathway error on Mac OS X
seq2pathway
error
python
mac os x
9.1 years ago
termanini
▴ 10
0
votes
3
replies
2.5k
views
incorrect biomaRt output order of gene list
biomart
ensembldb
error
6.6 years ago
Yuqia
• 0
0
votes
6
replies
4.1k
views
Error in using Pathview package. Do not print the pathways provided by GAGE analysis
gage
pathview
error
updated 8.3 years ago by
Luo Weijun
★ 1.6k • written 8.4 years ago by
marie.bordone
• 0
3
votes
4
replies
14k
views
converting ensembl transcript ID to ensemble gene: problem & missing values
biomart
error
ensembldb
6.6 years ago
Yuqia
• 0
3
votes
14
replies
3.9k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart
error
ensembl
bioconductor
ensembl mart
7.4 years ago • updated 7.3 years ago
daniel.carbajo
• 0
6
votes
6
replies
3.7k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound)
Gostats
go term
annotation
drosophila melanogaster
error
updated 7.7 years ago by
tlaguna
▴ 10 • written 8.4 years ago by
nooshin
▴ 300
1
vote
7
replies
2.1k
views
Ballgown object construction error
ballgown
scan
error
package
7.4 years ago • updated 7.3 years ago
spaque57
• 0
1
vote
3
replies
2.4k
views
Pathview pathview kegg.native=TRUE throws error in img
pathview
kegg
error
bioconductor
rnaseq
updated 7.0 years ago by
map2085
▴ 40 • written 7.6 years ago by
guillermo.marco
▴ 30
0
votes
4
replies
1.6k
views
[biomaRt] getBM: Error when obtaining mim_morbid_description
biomart
getbm
error
9.6 years ago
Tibor Fulop
• 0
0
votes
4
replies
3.5k
views
GEOquery: Error Message
geoquery
error
updated 9.1 years ago by
contato.carlosbau
▴ 10 • written 9.3 years ago by
alakatos
▴ 130
0
votes
3
replies
2.8k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio
cummerbund
error
7.3 years ago
mszskb
• 0
1
vote
2
replies
1.7k
views
TCGABiolinks::GDCquery() suddenly sending back unknown error
software error
error
tcgabiolinks
GDCquery
updated 6.9 years ago by
eshelden
▴ 40 • written 6.9 years ago by
jrlarsen
▴ 10
12
votes
10
replies
11k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 6 months ago by
juo5
• 0 • written 11 months ago by
Abhishek
▴ 20
0
votes
4
replies
1.6k
views
error in import.exon.scheme, XPS package
xps
import.exon.scheme
error
rnadegradationplot
8.6 years ago
Biologist
▴ 120
0
votes
5
replies
1.8k
views
readTranscriptFeatures from genomation
R
Rstudio
Error
readTranscriptFeatures
genomation
updated 4.9 years ago by
altuna akalin
▴ 20 • written 4.9 years ago by
hwaterma
• 0
4
votes
9
replies
4.0k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt
error
getBM
updated 3.4 years ago by
Mike Smith
★ 6.5k • written 3.6 years ago by
Zen
▴ 20
2
votes
5
replies
4.0k
views
GDCdownload does not work
GDCdow
tcgabiolinks
error
tcgadownload
download_error
updated 5.8 years ago by
Tiago Chedraoui Silva
▴ 260 • written 5.8 years ago by
miki716
• 0
3
votes
4
replies
3.2k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error
mac
DESeq2
GenomeInfoDb
R
3.8 years ago • updated 3.7 years ago
Dan
▴ 20
1
vote
6
replies
2.6k
views
GoSeq SupportedGenomes error
goseq
unsupported organisms
supportedgenomes
supportedorganisms
error
updated 7.6 years ago by
Gordon Smyth
51k • written 7.6 years ago by
tootiki
• 0
0
votes
7
replies
6.1k
views
DESeq estimateSizeFactors() is returning error "Error: all(!is.na(value)) is not TRUE"
deseq2
error
R
estimatesizefactors
zero
updated 2.5 years ago by
LW
• 0 • written 7.0 years ago by
abhishek.yedugondla
• 0
1
vote
6
replies
3.8k
views
failed to load 'AnnotationHub' resource
annotationhub
annotation
error
8.8 years ago
elhananby
▴ 10
0
votes
17
replies
3.9k
views
What causes this DESeq2 error at "fitting model and testing"?
deseq2
differential expression
error
updated 16 months ago by
snow34
• 0 • written 7.0 years ago by
ap3637
• 0
1
vote
14
replies
1.4k
views
diffHic: Error while counting in predefined regions
error
8.1 years ago
manjulathimma
• 0
0
votes
3
replies
2.6k
views
Problems to create GmapGenome - gmapR
gmapR
GmapGenome
error
create
9.4 years ago
lelemraposo
▴ 10
2
votes
2
replies
1.2k
views
Deals with image value superior to 0,1 range
value
ebimage
writeImage
error
7.5 years ago
valerian.meline
• 0
0
votes
8
replies
1.9k
views
`bplapply` breaks down (BiocParallel_1.6.6, R 3.3.1, openSUSE Leap)
biocparallel
bplapply
Suse
error
process
updated 7.9 years ago by
jan.winter
• 0 • written 7.9 years ago by
schweringmarc01
• 0
3
votes
11
replies
4.4k
views
GEOquery http:// url error
geoquery
error
getgeo
microarray
geo
updated 6.7 years ago by
Sean Davis
21k • written 7.5 years ago by
jblack29
• 0
0
votes
6
replies
1.4k
views
DEsubs - Error in read.table during DEsubs command
DEsubs
error
updated 6.1 years ago by
Panos Balomenos
• 0 • written 6.1 years ago by
Talip Zengin
▴ 10
6
votes
6
replies
1.4k
views
Suggestion for next revision of edgeR User Guide re Design matrix setup
edger
error
updated 4.4 years ago by
Gordon Smyth
51k • written 4.4 years ago by
pdunn
• 0
1
vote
7
replies
2.7k
views
Error message from updated DESeq2
deseq2
beta prior
error
8.9 years ago
asaferali
• 0
0
votes
1
reply
4.0k
views
ERROR: lazy loading failed for package ‘org.Hs.eg.db’
org.hs.eg.db
annotationdbi
error
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
tina.khajeh
• 0
0
votes
1
reply
1.9k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads
error
as.vector(data)
s4vectors
s4
9.1 years ago
schasse
• 0
2
votes
1
reply
1.9k
views
'seqlevels(seqinfo(x))' and 'levels(seqnames(x))' are not identical
variantannotation
seqlevels
error
updated 10.1 years ago by
Valerie Obenchain
★ 6.8k • written 10.1 years ago by
Asma rabe
▴ 290
2
votes
11
replies
6.1k
views
DESeq2 error in evaluating the argument 'args' in selecting a method for function 'do.call'
deseq2
error
updated 9.1 years ago by
Michael Love
42k • written 9.1 years ago by
frankS
▴ 10
1
vote
2
replies
5.1k
views
ICU init failed: U_FILE_ACCESS_ERROR while loading library "VariantAnnotation"
variantannotation
library
error
updated 9.1 years ago by
Valerie Obenchain
★ 6.8k • written 9.1 years ago by
kmu004
▴ 50
1
vote
1
reply
1.7k
views
Error updating packages: couldn’t understand kern.osversion
package updates
error
updated 9.1 years ago by
Dan Tenenbaum
★ 8.2k • written 9.1 years ago by
sircoulombf
• 0
0
votes
1
reply
1.4k
views
LmFit and eBayes on merged ESET giving errors
limma
eset
error
ebayes
updated 9.3 years ago by
James W. MacDonald
67k • written 9.3 years ago by
Vani
▴ 20
0
votes
1
reply
2.1k
views
GO.db won't install for using goseq package
GO.db
goseq
package installation
error
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
veerle
• 0
0
votes
7
replies
3.2k
views
BiocInstaller wants version of R that is not available yet
bioconductor
error
biocinstaller
package installation
install
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
matt.s.leslie
• 0
1
vote
3
replies
5.7k
views
Error in cleanContrast
deseq2
r
error
updated 7.9 years ago by
Michael Love
42k • written 7.9 years ago by
lauren.fitch
• 0
0
votes
3
replies
1.5k
views
error while making database using Annotationforge package
annotationforge
error
database
updated 8.2 years ago by
Guido Hooiveld
★ 4.1k • written 8.2 years ago by
kritikamish99
▴ 10
0
votes
1
reply
1.9k
views
can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor
workflowinstall
error
rnaseqgene
updated 8.3 years ago by
Valerie Obenchain
★ 6.8k • written 8.3 years ago by
cagenet34
▴ 20
2
votes
4
replies
9.1k
views
Limma LmFit() giving error: Error in lm.fit(design, t(M)) : incompatible dimension
limma
differential expression
design matrix
error
eset
updated 9.3 years ago by
Aaron Lun
★ 28k • written 9.3 years ago by
Vani
▴ 20
0
votes
5
replies
3.2k
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function assayNames for signature "DESeqDataSet"
deseq2
error
updated 8.3 years ago by
Michael Love
42k • written 8.3 years ago by
nooshin
▴ 300
2
votes
2
replies
1.7k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks
GDCprepare
error
updated 5.3 years ago by
Tiago C. Silva
▴ 270 • written 5.3 years ago by
Talip Zengin
▴ 10
1
vote
1
reply
1.7k
views
Minfi RGChannelSet preprocessing error in assayDataElement
minfi
preprocessing
error
updated 8.1 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.1 years ago by
lily
• 0
2
votes
2
replies
2.2k
views
Can I calculate counts from the base mean and log2fc outputs of DESeq2? Also, can I calculate error for counts values from lfcse output?
deseq2
chipseq
counts
log2fc
error
updated 8.4 years ago by
Michael Love
42k • written 8.4 years ago by
robin.uchiyama
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Are transformed values from rlog /vst log2 normalized counts?
by
Eva
▴ 10
I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…
Answer: featureCounts fails to load annotation file
by
James W. MacDonald
67k
I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
67k
That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …
Comment: Are transformed values from rlog /vst log2 normalized counts?
by
James W. MacDonald
67k
The `DESeq2` package is meant to analyze count data! Most packages that are intended to be used for RNA-Seq data are going to want the raw …
Comment: Are transformed values from rlog /vst log2 normalized counts?
by
Eva
▴ 10
Many thanks for you detailed answer, I really appreciate it. Could you give me an example (or more if possible) of analysis using count-b…
Votes
Answer: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable
Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical
Awards
• All
Popular Question
to
Dorien
▴ 10
Popular Question
to
boczniak767
▴ 740
Popular Question
to
Guido Hooiveld
★ 4.1k
Popular Question
to
Hervé Pagès
16k
Teacher
to
Ryan C. Thompson
★ 7.9k
Locations
• All
Spain,
10 minutes ago
United States,
26 minutes ago
United States,
47 minutes ago
United States,
1 hour ago
Australia,
1 hour ago
Traffic: 820 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6