Bioconductor Error

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3.4k

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deseq2 differential expression error

updated 10 months ago by snow34 • 0 • written 6.6 years ago by ap3637 • 0

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6.6k

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error lazy R biomaRt table

updated 4 weeks ago by juo5 • 0 • written 6 months ago by Abhishek ▴ 10

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607

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Config DiffBind Error

updated 9 months ago by Rory Stark ★ 5.2k • written 9 months ago by jason.kost • 0

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1.5k

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error RStudio ggplot2 DESeq2

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by BioES • 0

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1.1k

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error SingleCell annotate

updated 5 months ago by yw24418 • 0 • written 13 months ago by sandra.garces.19 • 0

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458

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customProDB easyrun error mm10 Mus_musculus_Data

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by Esraa • 0

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379

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TCGAbiolinks error GDC_prepare

6 months ago leon • 0

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274

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proActiv error estimateSizeFactorsForMatrix

6 months ago Chris • 0

8 results • Page 1 of 1

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Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

This comment helps.

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0