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Error
•
reset
0
votes
17
replies
2.5k
views
Issue with easyRNASeq
easyRNASeq
error
8.4 years ago
ea11g0
• 0
0
votes
17
replies
2.9k
views
What causes this DESeq2 error at "fitting model and testing"?
deseq2
differential expression
error
updated 5 months ago by
snow34
• 0 • written 6.2 years ago by
ap3637
• 0
3
votes
14
replies
3.4k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart
error
ensembl
bioconductor
ensembl mart
6.5 years ago
daniel.carbajo
• 0
1
vote
14
replies
1.1k
views
diffHic: Error while counting in predefined regions
error
7.2 years ago
manjulathimma
• 0
0
votes
14
replies
1.9k
views
annFUN error TOPGO
TOPGO
annFUN
error
updated 3.6 years ago by
Kevin Blighe
3.9k • written 3.6 years ago by
eleonora.porcu
• 0
3
votes
11
replies
3.6k
views
GEOquery http:// url error
geoquery
error
getgeo
microarray
geo
updated 5.8 years ago by
Sean Davis
21k • written 6.6 years ago by
jblack29
• 0
1
vote
11
replies
4.8k
views
DESeq2 error in evaluating the argument 'args' in selecting a method for function 'do.call'
deseq2
error
updated 8.2 years ago by
Michael Love
41k • written 8.2 years ago by
frankS
• 0
2
votes
9
replies
16k
views
DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
deseq2
error
updated 2.2 years ago by
Michael Love
41k • written 6.4 years ago by
anpham
▴ 40
4
votes
9
replies
3.4k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt
error
getBM
updated 2.5 years ago by
Mike Smith
★ 6.2k • written 2.8 years ago by
Zen
▴ 20
0
votes
8
replies
810
views
fail to annotate chromosome data to single cell object
error
SingleCell
annotate
updated 10 days ago by
yw24418
• 0 • written 8 months ago by
sandra.garces.19
• 0
0
votes
8
replies
2.2k
views
tximport command error
tx2gene
txi
error
updated 4.6 years ago by
James W. MacDonald
64k • written 4.6 years ago by
eliztran
• 0
0
votes
8
replies
1.6k
views
`bplapply` breaks down (BiocParallel_1.6.6, R 3.3.1, openSUSE Leap)
biocparallel
bplapply
Suse
error
process
updated 7.0 years ago by
jan.winter
• 0 • written 7.0 years ago by
schweringmarc01
• 0
0
votes
8
replies
2.4k
views
Error in simpleLoess when running DEXSeq
DEX
error
simpleLoess
RNAseq
updated 9.2 years ago by
Alejandro Reyes
★ 1.9k • written 9.2 years ago by
cfreije
▴ 10
5
votes
7
replies
2.5k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 5.5 years ago by
James W. MacDonald
64k • written 5.5 years ago by
Miskey, Csaba
▴ 20
1
vote
7
replies
1.6k
views
Ballgown object construction error
ballgown
scan
error
package
6.5 years ago • updated 6.4 years ago
spaque57
• 0
4
votes
7
replies
1.1k
views
bam files to hilbert curve
HilbertCurve
error
bamfiles
GRobject
4.2 years ago
adklts
• 0
0
votes
7
replies
634
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error
RStudio
ggplot2
DESeq2
updated 22 days ago by
James W. MacDonald
64k • written 25 days ago by
BioES
• 0
1
vote
7
replies
2.4k
views
Error message from updated DESeq2
deseq2
beta prior
error
8.0 years ago
asaferali
• 0
0
votes
7
replies
1.2k
views
Centos 7.8, custom-compiled R-4.1: iPath_1.0.0 won't install
error
iPath
R
compilation
23 months ago • updated 22 months ago
wjb2130
• 0
0
votes
7
replies
2.8k
views
BiocInstaller wants version of R that is not available yet
bioconductor
error
biocinstaller
package installation
install
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
matt.s.leslie
• 0
0
votes
7
replies
5.0k
views
DESeq estimateSizeFactors() is returning error "Error: all(!is.na(value)) is not TRUE"
deseq2
error
R
estimatesizefactors
zero
updated 20 months ago by
LW
• 0 • written 6.2 years ago by
abhishek.yedugondla
• 0
0
votes
6
replies
1.1k
views
DEsubs - Error in read.table during DEsubs command
DEsubs
error
updated 5.2 years ago by
Panos Balomenos
• 0 • written 5.3 years ago by
Talip Zengin
▴ 10
0
votes
6
replies
7.2k
views
Rhtslib - install error
Rhtslib
installation
error
zlib
updated 4.2 years ago by
leoadam014
• 0 • written 5.1 years ago by
boboshaq
• 0
6
votes
6
replies
988
views
Suggestion for next revision of edgeR User Guide re Design matrix setup
edger
error
updated 3.5 years ago by
Gordon Smyth
48k • written 3.5 years ago by
pdunn
• 0
6
votes
6
replies
3.2k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound)
Gostats
go term
annotation
drosophila melanogaster
error
updated 6.8 years ago by
tlaguna
▴ 10 • written 7.5 years ago by
nooshin
▴ 300
2
votes
6
replies
1.6k
views
featurecounts Rsubread ERROR on exon_id
R
error
software error
Rsubread
featurecounts
updated 4.7 years ago by
Wei Shi
★ 3.5k • written 4.7 years ago by
edejong
• 0
1
vote
6
replies
2.2k
views
GoSeq SupportedGenomes error
goseq
unsupported organisms
supportedgenomes
supportedorganisms
error
updated 6.7 years ago by
Gordon Smyth
48k • written 6.7 years ago by
tootiki
• 0
0
votes
6
replies
1.7k
views
atacseqQC error while splittin the bamfile
ATACseqQC
ATAC-seq
error
split bam file
updated 4.6 years ago by
contact
• 0 • written 4.6 years ago by
Theo
• 0
2
votes
6
replies
1.3k
views
EdgeR glmTreat error
edger
error
updated 4.6 years ago by
James W. MacDonald
64k • written 4.6 years ago by
lucap
• 0
0
votes
6
replies
1.7k
views
BiSeq trimClusters error
biseq
error
trimClusters
updated 7.8 years ago by
Katja Hebestreit
▴ 130 • written 7.9 years ago by
kms68
• 0
1
vote
6
replies
3.3k
views
failed to load 'AnnotationHub' resource
annotationhub
annotation
error
7.9 years ago
elhananby
▴ 10
0
votes
6
replies
3.7k
views
Error in getOneSeqFromBSgenomeMultipleSequences During singeR tutorial
error
4.4 years ago
dfcarril
• 0
0
votes
6
replies
3.0k
views
Error in using Pathview package. Do not print the pathways provided by GAGE analysis
gage
pathview
error
updated 7.4 years ago by
Luo Weijun
★ 1.6k • written 7.5 years ago by
marie.bordone
• 0
3
votes
5
replies
1.4k
views
CNV parameter not working - MEDIPS
medips
medip-seq
error
lukas
updated 6.5 years ago by
Matthias Lienhard
▴ 240 • written 6.5 years ago by
anupriyaverma1408
• 0
1
vote
5
replies
1.3k
views
How do I stop DESeq2 from loading and additional errors related to the package.
r
deseq2
error
updated 5.4 years ago by
Axel Klenk
▴ 990 • written 5.4 years ago by
mdi3
• 0
2
votes
5
replies
3.2k
views
GDCdownload does not work
GDCdow
tcgabiolinks
error
tcgadownload
download_error
updated 4.9 years ago by
Tiago Chedraoui Silva
▴ 260 • written 4.9 years ago by
miki716
• 0
0
votes
5
replies
2.7k
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function assayNames for signature "DESeqDataSet"
deseq2
error
updated 7.5 years ago by
Michael Love
41k • written 7.5 years ago by
nooshin
▴ 300
0
votes
5
replies
1.3k
views
readTranscriptFeatures from genomation
R
Rstudio
Error
readTranscriptFeatures
genomation
updated 4.0 years ago by
altuna akalin
▴ 20 • written 4.0 years ago by
hwaterma
• 0
5
votes
5
replies
6.3k
views
DESeq2 "DESeqDataSetFromMatrix" function has started to give me an error
deseq2
error
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
alextuck
▴ 30
0
votes
5
replies
1.8k
views
Flowclust install probelms on Ubuntu
flowclust
ubuntu
install
error
8.5 years ago
gareth.howell
• 0
10
votes
5
replies
5.9k
views
Error: This function only works when used with the ensembl BioMart.
biomart
error
8.0 years ago
anchel.gonzalez
• 0
3
votes
4
replies
1.5k
views
seq2pathway error on Mac OS X
seq2pathway
error
python
mac os x
8.2 years ago
termanini
▴ 10
3
votes
4
replies
2.5k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error
mac
DESeq2
GenomeInfoDb
R
2.9 years ago • updated 2.8 years ago
Dan
▴ 20
0
votes
4
replies
1.4k
views
[biomaRt] getBM: Error when obtaining mim_morbid_description
biomart
getbm
error
8.8 years ago
Tibor Fulop
• 0
3
votes
4
replies
11k
views
converting ensembl transcript ID to ensemble gene: problem & missing values
biomart
error
ensembldb
5.8 years ago • updated 5.7 years ago
Yuqia
• 0
2
votes
4
replies
7.9k
views
Limma LmFit() giving error: Error in lm.fit(design, t(M)) : incompatible dimension
limma
differential expression
design matrix
error
eset
updated 8.4 years ago by
Aaron Lun
★ 28k • written 8.4 years ago by
Vani
▴ 20
0
votes
4
replies
2.9k
views
GEOquery: Error Message
geoquery
error
updated 8.3 years ago by
contato.carlosbau
▴ 10 • written 8.4 years ago by
alakatos
▴ 130
0
votes
4
replies
1.3k
views
error in import.exon.scheme, XPS package
xps
import.exon.scheme
error
rnadegradationplot
7.8 years ago • updated 7.7 years ago
Biologist
▴ 110
0
votes
4
replies
815
views
nucleR ERROR unable to find an inherited method for function peakDetection for signature
nucleosome
peaks
error
Job
updated 4.0 years ago by
James W. MacDonald
64k • written 4.0 years ago by
anne.kannengiesser
• 0
0
votes
4
replies
1.6k
views
DESeq2 compare all_vs_all levels error
deseq2
error
RNAseq
updated 4.4 years ago by
swbarnes2
★ 1.3k • written 4.4 years ago by
aishu.jp
▴ 30
50 results • Page
1 of 1
Recent ...
Replies
Comment: Problem loading HDF5Array in R 4.3.2
by
Mike Smith
★ 6.2k
Great, I'm glad it worked. It's frustrating that the binary doesn't work for you; that shouldn't happen! However I'm not sure how to go a…
Comment: It's possible to use clusterProfiler without an annotationDBI package
by
Guido Hooiveld
★ 3.8k
No, I don't. Confirm that `geneList` has the expected format. What is the outcome of `geneList[1:5]`, `str(geneList)` and `class(geneList)…
Comment: It's possible to use clusterProfiler without an annotationDBI package
by
Guido Hooiveld
★ 3.8k
Did you try it yourselves? But the answer is yes.
Comment: It's possible to use clusterProfiler without an annotationDBI package
by
nromerov
• 0
Also do you know if the gaphical functions as dotplot, enrichmap and cnetplot works on this generic analysis? still sorry for bothering you
Comment: It's possible to use clusterProfiler without an annotationDBI package
by
nromerov
• 0
Thank you very much for your help iu was really deseperate about this that i wasn't thinking too well yesterday im really gratefull with yo…
Votes
Comment: Problem loading HDF5Array in R 4.3.2
Answer: gseGO input list
Comment: Problem loading HDF5Array in R 4.3.2
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
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