Showing : Error • reset
2
votes
7
replies
6.5k
views
DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
deseq2 error
updated 7 months ago by 34k • written 4.2 years ago by ▴ 30
0
votes
0
replies
5.4k
views
maSigPro error PlotGroups [Error: (list) object cannot be coerced to type 'double']
masigpro error PlotGroups
4.3 years ago nicolas.descostes ▴ 20
2
votes
4
replies
5.1k
views
converting ensembl transcript ID to ensemble gene: problem & missing values
biomart error ensembldb
3.6 years ago • updated 3.5 years ago Yuqia • 0
5
votes
5
replies
5.0k
views
DESeq2 "DESeqDataSetFromMatrix" function has started to give me an error
deseq2 error
updated 6.2 years ago by 25k • written 6.2 years ago by ▴ 30
2
votes
4
replies
5.0k
views
Limma LmFit() giving error: Error in lm.fit(design, t(M)) : incompatible dimension
limma differential expression design matrix error eset
updated 6.2 years ago by ★ 27k • written 6.2 years ago by ▴ 20
9
votes
5
replies
4.3k
views
Error: This function only works when used with the ensembl BioMart.
biomart error
5.8 years ago anchel.gonzalez • 0
0
votes
6
replies
3.4k
views
Rhtslib - install error
Rhtslib installation error zlib
updated 24 months ago by • 0 • written 2.9 years ago by • 0
1
vote
4
replies
3.4k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler input files error help
updated 4.5 years ago by ★ 1.2k • written 4.5 years ago by • 0
1
vote
2
replies
3.3k
views
ICU init failed: U_FILE_ACCESS_ERROR while loading library "VariantAnnotation"
variantannotation library error
updated 6.1 years ago by ★ 6.7k • written 6.1 years ago by ▴ 40
1
vote
3
replies
2.8k
views
Error in cleanContrast
deseq2 r error
updated 4.8 years ago by 34k • written 4.8 years ago by • 0
0
votes
2
replies
2.8k
views
Error using TCGAbiolinks "Error in fix.by(by.y, y) : 'by' must specify a uniquely valid column"
TCGA tcgabiolinks Error
4.2 years ago f.geist ▴ 20
0
votes
1
reply
2.6k
views
preprocessCore problem: normalize.quantiles error
preprocesscore error normalization
updated 6.2 years ago by ▴ 760 • written 6.2 years ago by ▴ 10
0
votes
2
replies
2.6k
views
DESeq estimateSizeFactors() is returning error "Error: all(!is.na(value)) is not TRUE"
deseq2 error R estimatesizefactors zero
updated 3.8 years ago by • 0 • written 4.0 years ago by • 0
0
votes
1
reply
2.5k
views
"Package which is only available in source form, and may need compilation of C/C++/Fortran"
networkBMA error
4.1 years ago milenamagalhaes • 0
3
votes
14
replies
2.4k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart error ensembl bioconductor ensembl mart
4.3 years ago daniel.carbajo • 0
0
votes
1
reply
2.2k
views
ERROR: lazy loading failed for package ‘org.Hs.eg.db’
org.hs.eg.db annotationdbi error
updated 6.4 years ago by ★ 8.2k • written 6.4 years ago by • 0
1
vote
6
replies
2.2k
views
failed to load 'AnnotationHub' resource
annotationhub annotation error
5.8 years ago • updated 5.7 years ago elhananby ▴ 10
6
votes
6
replies
2.1k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound)
Gostats go term annotation drosophila melanogaster error
updated 4.6 years ago by ▴ 10 • written 5.3 years ago by ▴ 290
2
votes
3
replies
2.1k
views
DESeq2- preliminary study no replicates
deseq2 replicates error DESeqDataSetFromMatrix
updated 2.5 years ago by 34k • written 2.5 years ago by • 0
0
votes
5
replies
2.1k
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function assayNames for signature "DESeqDataSet"
deseq2 error
updated 5.3 years ago by 34k • written 5.3 years ago by ▴ 290
0
votes
7
replies
2.0k
views
BiocInstaller wants version of R that is not available yet
bioconductor error biocinstaller package installation install
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
3
votes
11
replies
2.0k
views
GEOquery http:// url error
geoquery error getgeo microarray geo
updated 3.7 years ago by 21k • written 4.4 years ago by • 0
1
vote
7
replies
2.0k
views
Error message from updated DESeq2
deseq2 beta prior error
5.9 years ago asaferali • 0
5
votes
7
replies
1.9k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 3.3 years ago by 58k • written 3.3 years ago by ▴ 20
0
votes
4
replies
1.9k
views
GEOquery: Error Message
geoquery error
updated 6.1 years ago by ▴ 10 • written 6.2 years ago by ▴ 110
1
vote
11
replies
1.9k
views
DESeq2 error in evaluating the argument 'args' in selecting a method for function 'do.call'
deseq2 error
updated 6.0 years ago by 34k • written 6.0 years ago by • 0
0
votes
8
replies
1.7k
views
Error in simpleLoess when running DEXSeq
DEX error simpleLoess RNAseq
updated 7.0 years ago by ★ 1.8k • written 7.0 years ago by ▴ 10
0
votes
17
replies
1.6k
views
Issue with easyRNASeq
easyRNASeq error
6.2 years ago ea11g0 • 0
0
votes
2
replies
1.6k
views
gcrma error " 'Calloc' could not allocate memory"
gcrma error
updated 3.9 years ago by 58k • written 3.9 years ago by • 0
0
votes
3
replies
1.5k
views
Problems to create GmapGenome - gmapR
gmapR GmapGenome error create
6.3 years ago lelemraposo • 0
1
vote
6
replies
1.5k
views
GoSeq SupportedGenomes error
goseq unsupported organisms supportedgenomes supportedorganisms error
updated 4.5 years ago by 43k • written 4.6 years ago by • 0
0
votes
3
replies
1.5k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
4.3 years ago mszskb • 0
4
votes
9
replies
1.5k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 3 months ago by ★ 5.1k • written 6 months ago by ▴ 20
0
votes
12
replies
1.4k
views
What causes this DESeq2 error at "fitting model and testing"?
deseq2 differential expression error
4.0 years ago ap3637 • 0
0
votes
3
replies
1.4k
views
Error when constructing DESeqDataSetFromMatrix (Error in round(assay(se)): non-numeric argument to mathematical function)
deseq2 R error
updated 3.5 years ago by 34k • written 3.5 years ago by • 0
2
votes
1
reply
1.4k
views
Cummerbund error column name mismatch
cummerbund bug error
4.2 years ago tannerndrsn4 ▴ 20
0
votes
1
reply
1.4k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 4.0 years ago by 25k • written 4.0 years ago by • 0
1
vote
1
reply
1.3k
views
Error in Package GEOquery
geoquery error R microarray
updated 6.4 years ago by 58k • written 6.4 years ago by ▴ 20
0
votes
6
replies
1.3k
views
Error in using Pathview package. Do not print the pathways provided by GAGE analysis
gage pathview error
updated 5.2 years ago by ★ 1.5k • written 5.3 years ago by • 0
3
votes
2
replies
1.3k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2 results error
3.9 years ago hs.lansdell ▴ 10
0
votes
1
reply
1.3k
views
phyloseq merge_samples attempt to set rownames on an object with no dimensions
phyloseq merge_samples rownames error
5.0 years ago newmanss • 0
1
vote
3
replies
1.3k
views
Pathview pathview kegg.native=TRUE throws error in img
pathview kegg error bioconductor rnaseq
updated 3.9 years ago by ▴ 40 • written 4.6 years ago by ▴ 30
0
votes
2
replies
1.3k
views
unused argument (organism="human")
error
updated 5.0 years ago by ▴ 450 • written 5.0 years ago by • 0
0
votes
1
reply
1.3k
views
DESeq2: error with DESeqDataSet function
deseq2 error DESeqDataSet DESeqDataSet
updated 3.9 years ago by 34k • written 3.9 years ago by • 0
2
votes
5
replies
1.2k
views
GDCdownload does not work
GDCdow tcgabiolinks error tcgadownload download_error
updated 2.8 years ago by ▴ 260 • written 2.8 years ago by • 0
0
votes
1
reply
1.2k
views
can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 5.3 years ago by ★ 6.7k • written 5.3 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Error installing org.Hs.eg.db
org.hs.eg.db error
updated 4.4 years ago by 58k • written 4.4 years ago by • 0
1
vote
1
reply
1.2k
views
Error updating packages: couldn’t understand kern.osversion
package updates error
updated 6.1 years ago by ★ 8.2k • written 6.1 years ago by • 0
0
votes
5
replies
1.2k
views
Flowclust install probelms on Ubuntu
flowclust ubuntu install error
6.3 years ago gareth.howell • 0
0
votes
1
reply
1.2k
views
CODEX pipeline fails: Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) : subscript contains NAs
bioconductor codex error
updated 5.9 years ago by • 0 • written 5.9 years ago by • 0
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Answer: Undefined columns error R cytometry analysis by Jiang, Mike ★ 1.3k
I see you are trying to fill the missing transform info to `gs_bcell_auto` , which is a hack, but since you seems to know what you are doin…
Comment: how to get MFI stats from data by Jiang, Mike ★ 1.3k
Can you grant the public caccess to you fcs to reproduce your issue?
Answer: Getting a dataset that only contains the flow data within the gated area by Jiang, Mike ★ 1.3k
You didn't post your example code, so here is my best guess of your workflow > library(flowCore) > library(flowWorkspace) …
Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
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Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
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