Bioconductor Exon

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816

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DEXSeq exon_definition exon

updated 9 months ago by Alejandro Reyes ★ 1.9k • written 9 months ago by zhangpeng1202 • 0

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2.8k

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rsubread featurecounts exon mRNAseq

updated 6.9 years ago by Wei Shi ★ 3.6k • written 6.9 years ago by inah ▴ 10

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1.4k

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Annotatr CDS Exon UTR

updated 6.2 years ago by rcavalca ▴ 140 • written 6.2 years ago by xie186 • 0

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1.3k

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DEXSeq exon memory dispersions estimateDispersions

4.0 years ago andreismolnikov00 • 0

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1.7k

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rnaseq exon quasr

updated 9.4 years ago by Steve Lianoglou ★ 13k • written 9.4 years ago by sven.schuierer • 0

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819

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splicing Exon featureCounts subread DEXSeq

23 months ago • updated 22 months ago NIK • 0

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630

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DEXSeq exon

updated 2.1 years ago by Alejandro Reyes ★ 1.9k • written 2.1 years ago by jochen • 0

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373

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exon AnnotationHubData

11 months ago mahima.g • 0

8 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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