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ExperimentHub
•
reset
0
votes
4
replies
180
views
Storing directories inside an ExperimentHub package?
ExperimentHub
9 days ago • updated 8 days ago
Tim Barry
• 0
0
votes
4
replies
1.2k
views
Cannot connect to ExperimentHub server
ExperimentHub
4 months ago
yanling
• 0
6
votes
9
replies
4.5k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
updated 5 weeks ago by
Melissa
• 0 • written 5 months ago by
shepherl
3.8k
0
votes
1
reply
710
views
scRNAseq package and cell type annotations
ExperimentHub
R
ExperimentHubData
scRNAseq
SingleR
updated 13 months ago by
Peter Hickey
▴ 740 • written 13 months ago by
cathalgking
▴ 10
0
votes
3
replies
676
views
Can I create my own, private ExperimentHub instance?
ExperimentHub
20 months ago
sandmann.t
▴ 70
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.0 years ago
shepherl
3.8k
8
votes
33
replies
3.6k
views
Unable to download hg19.generanges as part of DMRcatedata package
DMRacte
DMRcateranges
ExperimentHub
hg19.generanges
updated 3.3 years ago by
friedmanhiccc
▴ 10 • written 3.6 years ago by
richardallenfriedmanbrooklyn
▴ 20
8
votes
16
replies
6.1k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 3.7 years ago by
shepherl
3.8k • written 3.7 years ago by
enricoferrero
▴ 660
2
votes
2
replies
683
views
ExperimentHub downloading files to home directory (~)
ExperimentHub
updated 5.0 years ago by
shepherl
3.8k • written 5.0 years ago by
story.benjamin
▴ 20
4
votes
10
replies
1.7k
views
Can't access devel version of ExperimentHub in Travis CI
experimenthub
continuous-integration
5.6 years ago • updated 5.5 years ago
Kyle Johnsen
▴ 30
1
vote
1
reply
720
views
What is the function of the 'make-metadata.R' script when making a ExperimentHub package?
experimenthub
updated 5.6 years ago by
shepherl
3.8k • written 5.6 years ago by
Kyle Johnsen
▴ 30
0
votes
7
replies
2.2k
views
ExperimentHub wackiness (which breaks packages that depend upon experimentHub-provided *data pkgs)
experimenthub
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
Tim Triche
★ 4.2k
5
votes
4
replies
1.3k
views
Eliminating repetitive calls to ExperimentHub
experimenthub
annotationhub
large dataset
5.9 years ago
slinker
▴ 20
5
votes
2
replies
1.7k
views
Setting ExperimentHub Cache Location
experimenthub
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
Mike Smith
★ 6.5k
5
votes
11
replies
2.5k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 7.3 years ago by
Levi Waldron
★ 1.1k • written 7.3 years ago by
morganx
▴ 10
5
votes
3
replies
1.4k
views
ExperimentHub()[["EH359"]] has character expression values
ExperimentHub
curatedMetagenomicData
updated 7.4 years ago by
Lucas Schiffer
▴ 240 • written 7.5 years ago by
Wolfgang Huber
★ 13k
2
votes
1
reply
1.1k
views
ExperimentHub - Error: database is corrupt
ExperimentHub
7.5 years ago
francois.collin
• 0
4
votes
7
replies
1.6k
views
AnnotationHub and ExperimentHub make "~" directory in my home
annotationhub
experimenthub
updated 7.6 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
Michael Love
41k
0
votes
2
replies
1.4k
views
Getting "error: database is corrupt" when using ExperimentHub()
experimenthub
gse62944
updated 7.8 years ago by
Valerie Obenchain
★ 6.8k • written 7.8 years ago by
shinx558
• 0
19 results • Page
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Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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