Showing : Experimental Design • reset
6
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6
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4.0k
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Limma multi-group analysis - General F-test
limma experimental design
updated 3.9 years ago by 50k • written 3.9 years ago by ▴ 10
0
votes
1
reply
670
views
DESeq2 compairson of 3 samples from 1 type
deseq2 multiple factor design contrasts experimental design
updated 4.9 years ago by 41k • written 4.9 years ago by • 0
1
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2
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793
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Call DE genes on Unbalanced design with controls
edger experimental design
4.9 years ago timedreamer ▴ 10
0
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4
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934
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DESeq2 analysis design - different individuals for all samples
deseq2 rnaseq model.matrix experimental design
5.4 years ago Maithê Barros ▴ 10
1
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9
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1.5k
views
shRNA-Seq analysis using edgeR
shrnaseq edger experimental design model.matrix
updated 5.4 years ago by ★ 28k • written 5.4 years ago by ★ 1.5k
0
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0
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885
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Job: Postdoctoral Research Fellowship- reinforcement learning in biology- London
job bioinformatician job machine learning gene expression experimental design Job
5.5 years ago dezer ▴ 10
2
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6
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1.1k
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DESeq2 Gene Expression Set up: Behavior vs Age
deseq2 experimental design
updated 5.6 years ago by 41k • written 5.6 years ago by • 0
4
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2
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1.1k
views
How does the function model.matrix (to define experimental design) really works ?
experimental design model.matrix edger
updated 6.1 years ago by ★ 7.9k • written 6.1 years ago by ▴ 20
1
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2
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1.4k
views
DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 6.2 years ago by 41k • written 6.2 years ago by • 0
0
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1
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2.9k
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DESeq2 design model/contrasts question 3 level condition
deseq2 model design differential gene expression experimental design
updated 6.2 years ago by 41k • written 6.2 years ago by • 0
6
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1
reply
11k
views
DESeq2 interaction term in two-factor design, which contrasts?
deseq2 experimental design interaction model
updated 6.7 years ago by 41k • written 6.7 years ago by ▴ 30
1
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2
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4.4k
views
Multiple comparisons for DE analysis with DESeq2
deseq2 mirna-seq experimental design differential expression
updated 6.9 years ago by ▴ 680 • written 6.9 years ago by ▴ 10
1
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2
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1.5k
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Trying to design a model(s) for a two factor RNA-seq experimental analysis in EdgeR with interaction
EdgeR RNAseq experimental design glm
updated 7.1 years ago by ★ 28k • written 7.1 years ago by • 0
0
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1
reply
923
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Genotypic difference design using deseq2
Deseq2 genotype experimental design
updated 7.2 years ago by 41k • written 7.2 years ago by ▴ 90
5
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2
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1.8k
views
DESeq2 design matrix for timecourse
deseq2 experimental design timecourse rnaseq model
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 20
2
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2
replies
1.3k
views
EdgeR experimental design matrix
edger differential gene expression experimental design
updated 7.9 years ago by ★ 28k • written 7.9 years ago by • 0
6
votes
1
reply
2.5k
views
DESeq2, difficulties with multi-factor design
DESeq2 multiple factor design experimental design contrast
updated 8.4 years ago by 41k • written 8.4 years ago by ▴ 60
5
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7
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2.0k
views
what conditions affect my gene (with limma?)
limma geo experimental design
updated 8.7 years ago by 50k • written 8.7 years ago by • 0
4
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3
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2.9k
views
DESeq2 - design for TCGA level 3 data
deseq2 tcga experimental design multiple factor design
updated 8.9 years ago by 41k • written 8.9 years ago by ▴ 40
1
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2
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1.6k
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qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 9.0 years ago by 50k • written 9.0 years ago by ▴ 450
0
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4
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2.0k
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Question: DESeq2 nested design, multifactor test
deseq2 experimental design
9.0 years ago Shucong Li ▴ 60
21 results • Page 1 of 1
Recent ...
Replies
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) …
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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