Showing : ExpressionData • reset
3
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2
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1.1k
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NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData ArrayExpress
updated 3.0 years ago by 50k • written 3.0 years ago by • 0
0
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3
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784
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expression data
ExpressionData ExpressionNormalizationWorkflow
updated 19 months ago by 65k • written 19 months ago by • 0
1
vote
3
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955
views
DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 3.2 years ago by 41k • written 3.2 years ago by • 0
0
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1
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628
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HSMMSingleCell metadata
ExperimentHubData ExpressionData CellDataSet RNASeqData
2.1 years ago karl.stamm ▴ 10
0
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1
reply
341
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Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 12 months ago by 41k • written 12 months ago by • 0
0
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2
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1.7k
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R: Confused about Limma R package output being LogFC or Log2FC
limma R ExpressionData
updated 14 months ago by 50k • written 15 months ago by • 0
0
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2
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1.7k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
2.9 years ago Clara • 0
2
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2
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810
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Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 2.1 years ago by • 0 • written 2.1 years ago by ▴ 10
3
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2
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532
views
please resolve the issue
gene ExpressionData
updated 13 months ago by 65k • written 13 months ago by • 0
0
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0
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1.1k
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How to display or output expression data with non-unique feature labels?
ExpressionData ExpressionData
16.8 years ago Kocherginsky, Masha [BSD] - HSD ▴ 10
0
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3
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881
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Error in loading data set
ExpressionData
updated 2.2 years ago by ▴ 780 • written 2.3 years ago by • 0
0
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2
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569
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Doubt about expression data as well as assay
GEOquery ExpressionData assay SummarizedExperiment ExpressionAtlas
updated 13 months ago by • 0 • written 13 months ago by • 0
1
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0
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823
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nested design with random factor and limma???
ExpressionData limma ExpressionData limma
15.8 years ago Bettina Kulle Andreassen ▴ 20
0
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0
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817
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nested design with random factor and limma???
ExpressionData limma ExpressionData limma
15.8 years ago Gordon Smyth 50k
0
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1
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694
views
Function createExpressionSet: Creating an ExpressionSet - Which package needed?
ExpressionData
updated 3.4 years ago by 41k • written 3.4 years ago by ▴ 40
0
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0
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1.2k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
3.3 years ago jol.espinoz ▴ 40
0
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0
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530
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edgeR testing interactions between two factors while controlling for blocking factor
edgeR ExpressionData RNASeqData
2.1 years ago Mafalda • 0
0
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0
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1.2k
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How to display or output expression data with non-unique feature labels?
Annotation ExpressionData Annotation ExpressionData
16.8 years ago Martin Morgan 25k
0
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0
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523
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Gene expression changes in one condition
RNASeq Gene ExpressionData
2.4 years ago AZ ▴ 30
19 results • Page 1 of 1
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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