Showing : ExpressionData • reset
3
votes
2
replies
532
views
please resolve the issue
gene ExpressionData
updated 13 months ago by 65k • written 13 months ago by • 0
3
votes
2
replies
1.2k
views
NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData ArrayExpress
updated 3.0 years ago by 50k • written 3.0 years ago by • 0
2
votes
2
replies
810
views
Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 2.1 years ago by • 0 • written 2.1 years ago by ▴ 10
1
vote
0
replies
824
views
nested design with random factor and limma???
ExpressionData limma ExpressionData limma
15.8 years ago Bettina Kulle Andreassen ▴ 20
1
vote
3
replies
956
views
DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 3.2 years ago by 41k • written 3.2 years ago by • 0
0
votes
1
reply
629
views
HSMMSingleCell metadata
ExperimentHubData ExpressionData CellDataSet RNASeqData
2.1 years ago karl.stamm ▴ 10
0
votes
1
reply
343
views
Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 12 months ago by 41k • written 12 months ago by • 0
0
votes
2
replies
1.7k
views
R: Confused about Limma R package output being LogFC or Log2FC
limma R ExpressionData
updated 14 months ago by 50k • written 15 months ago by • 0
0
votes
3
replies
881
views
Error in loading data set
ExpressionData
updated 2.2 years ago by ▴ 780 • written 2.3 years ago by • 0
0
votes
2
replies
570
views
Doubt about expression data as well as assay
GEOquery ExpressionData assay SummarizedExperiment ExpressionAtlas
updated 13 months ago by • 0 • written 13 months ago by • 0
0
votes
0
replies
530
views
edgeR testing interactions between two factors while controlling for blocking factor
edgeR ExpressionData RNASeqData
2.1 years ago Mafalda • 0
0
votes
0
replies
524
views
Gene expression changes in one condition
RNASeq Gene ExpressionData
2.4 years ago AZ ▴ 30
0
votes
2
replies
1.7k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
2.9 years ago Clara • 0
0
votes
0
replies
1.1k
views
How to display or output expression data with non-unique feature labels?
ExpressionData ExpressionData
16.8 years ago Kocherginsky, Masha [BSD] - HSD ▴ 10
0
votes
3
replies
784
views
expression data
ExpressionData ExpressionNormalizationWorkflow
updated 19 months ago by 65k • written 19 months ago by • 0
0
votes
0
replies
1.2k
views
How to display or output expression data with non-unique feature labels?
Annotation ExpressionData Annotation ExpressionData
16.8 years ago Martin Morgan 25k
0
votes
0
replies
817
views
nested design with random factor and limma???
ExpressionData limma ExpressionData limma
15.8 years ago Gordon Smyth 50k
0
votes
1
reply
696
views
Function createExpressionSet: Creating an ExpressionSet - Which package needed?
ExpressionData
updated 3.4 years ago by 41k • written 3.4 years ago by ▴ 40
0
votes
0
replies
1.2k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
3.3 years ago jol.espinoz ▴ 40
19 results • Page 1 of 1
Recent ...
Replies
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
Awards • All
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Popular Question to Bine ▴ 40
Locations • All
South Korea, just now
Finland, 9 minutes ago
China, 13 minutes ago
France, 18 minutes ago
United States, 20 minutes ago
Traffic: 713 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6