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FASTA
•
reset
0
votes
0
replies
149
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
7 months ago
HELEN
• 0
0
votes
4
replies
902
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
10 months ago
HELEN
• 0
0
votes
0
replies
244
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
10 months ago
Endre Sebestyén
▴ 60
0
votes
1
reply
311
views
How to get similarity score between two genomes of different species
fasta
multi-species
21 months ago
drew.neely
• 0
0
votes
0
replies
248
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
21 months ago
dh.heredero
▴ 10
0
votes
1
reply
277
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
2.1 years ago
joannew
• 0
5
votes
8
replies
1.4k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 3.4 years ago by
Martin Morgan
25k • written 3.4 years ago by
Konstantinos Yeles
▴ 70
3
votes
3
replies
692
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 3.4 years ago by
Michael Lawrence
11k • written 3.4 years ago by
k.vitting.seerup
▴ 100
0
votes
2
replies
2.7k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 3.4 years ago by
James W. MacDonald
60k • written 3.4 years ago by
christinafragel
• 0
0
votes
0
replies
416
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
3.6 years ago
A
▴ 40
0
votes
16
replies
2.5k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
3.7 years ago
writetoroopali
• 0
0
votes
0
replies
768
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 3.7 years ago by
Martin Morgan
25k • written 3.7 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
556
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
4.7 years ago
achaillon
• 0
2
votes
3
replies
1.2k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 4.8 years ago by
James W. MacDonald
60k • written 4.8 years ago by
Glubbdrubb
• 0
2
votes
4
replies
805
views
convert a sequence to Ranges object
iranges
fasta
split
updated 5.4 years ago by
Michael Lawrence
11k • written 5.4 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
2
replies
2.2k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 5.4 years ago by
Martin Morgan
25k • written 5.4 years ago by
kevin.debray
• 0
8
votes
14
replies
8.0k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 5.1 years ago by
tongtong.wang1210
• 0 • written 5.4 years ago by
Olorin
▴ 50
1
vote
2
replies
1.4k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 5.4 years ago by
James W. MacDonald
60k • written 5.4 years ago by
fastabest
• 0
0
votes
5
replies
784
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 5.7 years ago by
Michael Lawrence
11k • written 5.7 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.1k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 6.2 years ago by
Jeff Johnston
▴ 90 • written 6.2 years ago by
TimothéeFlutre
▴ 80
0
votes
4
replies
1.8k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
6.3 years ago
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
1.1k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 6.5 years ago by
Hervé Pagès
15k • written 6.6 years ago by
giuliobarth
• 0
2
votes
0
replies
2.3k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
6.8 years ago
Sonali Arora
▴ 380
4
votes
3
replies
2.6k
views
a package for read.fasta
seqinr
fasta
updated 6.8 years ago by
Hervé Pagès
15k • written 6.8 years ago by
Angel
▴ 40
2
votes
4
replies
1.2k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 7.0 years ago by
xiaojing.wang
▴ 50 • written 7.0 years ago by
kristenbeck527
• 0
2
votes
2
replies
1.2k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
7.6 years ago
b.stielow
• 0
26 results • Page
1 of 1
Recent ...
Replies
Comment: Alternative for wininet method in tximeta
by
Michael Love
37k
I think you can then change the `?options` > download.file.method: > Method to be used for download.file. Currently download methods "i…
Comment: Alternative for wininet method in tximeta
by
uhlkatie
• 0
Hello, I have R version 4.2.1. I was able to install the curl package successfully. I received the same error message when I tried to run …
Comment: Confused about the CPM and TMM normalization in edgeR
by
James W. MacDonald
60k
I just explained how it works, and you told me you understand all that, but then ask the same question all over again? Perhaps you should r…
Answer: Alternative for wininet method in tximeta
by
Michael Love
37k
Try installing the curl package (from CRAN). Then you should be able to use download.file with ftp addresses (required for tximeta). …
Answer: how to get the gene set from online GO database
by
James W. MacDonald
60k
WebGestaltR is a CRAN package and is beyond the scope of this support site. In addition, this support site is primarily intended to help pe…
Votes
A: Retrieve canonical transcript for each gene via ensembldb R package
A: Samples without pair in paired design experiment
A: weird model design for DE analysis
weird model design for DE analysis
block design to test two factors with limma
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Kelen
• 0
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to
woongjaej
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to
Jenny Drnevich
★ 2.0k
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James W. MacDonald
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