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FASTA
•
reset
0
votes
16
replies
4.3k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
5.4 years ago
writetoroopali
• 0
8
votes
14
replies
11k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 6.8 years ago by
tongtong.wang1210
• 0 • written 7.2 years ago by
Olorin
▴ 50
6
votes
8
replies
2.7k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
Konstantinos Yeles
▴ 80
0
votes
5
replies
1.3k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 7.4 years ago by
Michael Lawrence
★ 11k • written 7.4 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
4
replies
2.7k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.1 years ago
Henrik Bengtsson
★ 2.4k
2
votes
4
replies
1.8k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 8.7 years ago by
xiaojing.wang
▴ 50 • written 8.7 years ago by
kristenbeck527
• 0
0
votes
4
replies
2.9k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
2.6 years ago
HELEN
• 0
2
votes
4
replies
1.3k
views
convert a sequence to Ranges object
iranges
fasta
split
updated 7.1 years ago by
Michael Lawrence
★ 11k • written 7.1 years ago by
Assa Yeroslaviz
★ 1.5k
3
votes
3
replies
1.3k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 5.2 years ago by
Michael Lawrence
★ 11k • written 5.2 years ago by
k.vitting.seerup
▴ 120
2
votes
3
replies
2.0k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 6.5 years ago by
James W. MacDonald
65k • written 6.5 years ago by
Glubbdrubb
• 0
4
votes
3
replies
3.7k
views
a package for read.fasta
seqinr
fasta
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
Angel
▴ 40
1
vote
2
replies
3.0k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
kevin.debray
• 0
0
votes
2
replies
4.9k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
christinafragel
• 0
0
votes
2
replies
845
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 3.8 years ago by
joannew
• 0
1
vote
2
replies
2.1k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
fastabest
• 0
2
votes
2
replies
1.8k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
9.4 years ago
b.stielow
• 0
0
votes
1
reply
658
views
How to get similarity score between two genomes of different species
fasta
multi-species
3.5 years ago
drew.neely
• 0
2
votes
1
reply
1.6k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 8.0 years ago by
Jeff Johnston
▴ 90 • written 8.0 years ago by
TimothéeFlutre
▴ 80
0
votes
1
reply
1.5k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 8.2 years ago by
Hervé Pagès
16k • written 8.4 years ago by
giuliobarth
• 0
0
votes
0
replies
607
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
2.4 years ago
HELEN
• 0
2
votes
0
replies
3.3k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
8.6 years ago
Sonali Arora
▴ 390
0
votes
0
replies
1.0k
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
6.5 years ago
achaillon
• 0
0
votes
0
replies
1.4k
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
854
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
5.4 years ago
A
▴ 40
0
votes
0
replies
658
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
3.5 years ago
dh.heredero
▴ 10
1
vote
0
replies
803
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
2.6 years ago
Endre Sebestyén
▴ 70
26 results • Page
1 of 1
Recent ...
Replies
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Dario Strbenac
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James W. MacDonald
65k
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Pierre Lindenbaum
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