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FASTA
•
reset
0
votes
16
replies
2.5k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
3.7 years ago
writetoroopali
• 0
8
votes
14
replies
8.0k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 5.1 years ago by
tongtong.wang1210
• 0 • written 5.4 years ago by
Olorin
▴ 50
5
votes
8
replies
1.4k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 3.4 years ago by
Martin Morgan
25k • written 3.4 years ago by
Konstantinos Yeles
▴ 70
0
votes
5
replies
785
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 5.7 years ago by
Michael Lawrence
11k • written 5.7 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
4
replies
1.8k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
6.3 years ago
Henrik Bengtsson
★ 2.4k
2
votes
4
replies
1.2k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 7.0 years ago by
xiaojing.wang
▴ 50 • written 7.0 years ago by
kristenbeck527
• 0
0
votes
4
replies
919
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
10 months ago
HELEN
• 0
2
votes
4
replies
807
views
convert a sequence to Ranges object
iranges
fasta
split
updated 5.4 years ago by
Michael Lawrence
11k • written 5.4 years ago by
Assa Yeroslaviz
★ 1.5k
3
votes
3
replies
693
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 3.4 years ago by
Michael Lawrence
11k • written 3.4 years ago by
k.vitting.seerup
▴ 100
2
votes
3
replies
1.2k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 4.8 years ago by
James W. MacDonald
60k • written 4.8 years ago by
Glubbdrubb
• 0
4
votes
3
replies
2.6k
views
a package for read.fasta
seqinr
fasta
updated 6.9 years ago by
Hervé Pagès
15k • written 6.9 years ago by
Angel
▴ 40
2
votes
2
replies
1.2k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
7.6 years ago
b.stielow
• 0
0
votes
2
replies
2.7k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 3.5 years ago by
James W. MacDonald
60k • written 3.5 years ago by
christinafragel
• 0
1
vote
2
replies
1.4k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 5.5 years ago by
James W. MacDonald
60k • written 5.5 years ago by
fastabest
• 0
1
vote
2
replies
2.2k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 5.4 years ago by
Martin Morgan
25k • written 5.4 years ago by
kevin.debray
• 0
0
votes
1
reply
279
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
2.1 years ago
joannew
• 0
0
votes
1
reply
1.1k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 6.5 years ago by
Hervé Pagès
15k • written 6.6 years ago by
giuliobarth
• 0
0
votes
1
reply
312
views
How to get similarity score between two genomes of different species
fasta
multi-species
21 months ago
drew.neely
• 0
2
votes
1
reply
1.1k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 6.2 years ago by
Jeff Johnston
▴ 90 • written 6.2 years ago by
TimothéeFlutre
▴ 80
0
votes
0
replies
152
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
8 months ago
HELEN
• 0
2
votes
0
replies
2.3k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
6.9 years ago
Sonali Arora
▴ 380
0
votes
0
replies
559
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
4.7 years ago
achaillon
• 0
0
votes
0
replies
775
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 3.7 years ago by
Martin Morgan
25k • written 3.7 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
417
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
3.6 years ago
A
▴ 40
0
votes
0
replies
250
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
21 months ago
dh.heredero
▴ 10
0
votes
0
replies
248
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
10 months ago
Endre Sebestyén
▴ 60
26 results • Page
1 of 1
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Comment: Error message: Could not find function "DESeqDataSetFromMatrix"
by
Md. Faridul
• 0
After run the library(DESeq2). Error: package or namespace load failed for ‘DESeq2’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()),…
Comment: Why Negative value from GSVA
by
Yang Shi
• 0
Thanks for your detailed reply sir! Sorry for the typo 'Row'. Actually, the raw count data is from TCGA database (STAR - Count). The Log2(F…
Comment: ComplexHeatmap - Heatmap function within a for loop
by
krushnach80
• 0
I'm trying to save list of heatmaps after doing this hm_lst<-cmplx_ht(list_of_files,metadata) The to save I tried something like thi…
Answer: calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMet
by
James W. MacDonald
60k
When a function is deprecated, that usually doesn't mean that the author/maintainer just changed the name of a function. That's always poss…
Answer: Cannot Install WGCNA
by
shepherl
3.1k
If you first install preprocessCore and then try again? `BiocManager::install("preprocessCore")` `BiocManager::install("WGCNA")` …
Votes
Answer: Why Negative value from GSVA
Mapping patient dataset onto control dataset
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
Answer: Error message: Could not find function "DESeqDataSetFromMatrix"
XVector installation fails because zlib.h is not found
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