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FASTA
•
reset
0
votes
0
replies
138
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
6 months ago
HELEN
• 0
0
votes
4
replies
735
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
9 months ago
HELEN
• 0
0
votes
0
replies
205
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
9 months ago
Endre Sebestyén
▴ 60
0
votes
1
reply
292
views
How to get similarity score between two genomes of different species
fasta
multi-species
20 months ago
drew.neely
• 0
0
votes
0
replies
237
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
20 months ago
dh.heredero
▴ 10
0
votes
1
reply
264
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
24 months ago
joannew
• 0
5
votes
8
replies
1.4k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
Konstantinos Yeles
▴ 70
3
votes
3
replies
673
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 3.3 years ago by
Michael Lawrence
11k • written 3.3 years ago by
k.vitting.seerup
▴ 100
0
votes
2
replies
2.6k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 3.3 years ago by
James W. MacDonald
60k • written 3.3 years ago by
christinafragel
• 0
0
votes
0
replies
402
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
3.5 years ago
A
▴ 40
0
votes
16
replies
2.4k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
3.6 years ago
writetoroopali
• 0
0
votes
0
replies
743
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 3.6 years ago by
Martin Morgan
25k • written 3.6 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
541
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
4.6 years ago
achaillon
• 0
2
votes
3
replies
1.2k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 4.7 years ago by
James W. MacDonald
60k • written 4.7 years ago by
Glubbdrubb
• 0
8
votes
14
replies
7.9k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 5.0 years ago by
tongtong.wang1210
• 0 • written 5.3 years ago by
Olorin
▴ 50
2
votes
4
replies
794
views
convert a sequence to Ranges object
iranges
fasta
split
updated 5.3 years ago by
Michael Lawrence
11k • written 5.3 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
2
replies
2.2k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 5.3 years ago by
Martin Morgan
25k • written 5.3 years ago by
kevin.debray
• 0
1
vote
2
replies
1.3k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 5.4 years ago by
James W. MacDonald
60k • written 5.4 years ago by
fastabest
• 0
0
votes
5
replies
772
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 5.6 years ago by
Michael Lawrence
11k • written 5.6 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.1k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 6.1 years ago by
Jeff Johnston
▴ 90 • written 6.1 years ago by
TimothéeFlutre
▴ 80
0
votes
4
replies
1.8k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
6.2 years ago
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
1.1k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 6.4 years ago by
Hervé Pagès
15k • written 6.5 years ago by
giuliobarth
• 0
4
votes
3
replies
2.5k
views
a package for read.fasta
seqinr
fasta
updated 6.8 years ago by
Hervé Pagès
15k • written 6.8 years ago by
Angel
▴ 40
2
votes
0
replies
2.2k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
6.8 years ago
Sonali Arora
▴ 380
2
votes
4
replies
1.1k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 6.9 years ago by
xiaojing.wang
▴ 50 • written 6.9 years ago by
kristenbeck527
• 0
2
votes
2
replies
1.2k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
7.5 years ago
b.stielow
• 0
26 results • Page
1 of 1
Recent ...
Replies
Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
by
wahaha
• 0
I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences
by
Nicole
• 0
The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences
by
Nicole
• 0
Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
Comment: Rsamtools is not available for (for R version 4.0.2)
by
olinares-perdomo
• 0
I had the same problem (R 4.2.0) I used BiocManager::install("Rsamtools", force = TRUE) And it is working fine
Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a
by
Gordon Smyth
45k
When I answered your original question, I assumed you would use the simplest possible code ``` Status <- factor(Sample_info$Status) ``` w…
Votes
Answer: DESeq2 how to specify contrast to test difference of differences
Comment: DESeq2 how to specify contrast to test difference of differences
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
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