Showing : FASTA • reset
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Read the first sequence from fasta file - TFBSTool
TFBSTools FASTA RStudio
6 months ago HELEN • 0
0
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4
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714
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transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
9 months ago HELEN • 0
0
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0
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194
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Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS mutation variant fasta
9 months ago Endre Sebestyén ▴ 60
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1
reply
288
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How to get similarity score between two genomes of different species
fasta multi-species
19 months ago drew.neely • 0
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235
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Working with fasta files in sangerseqR
Fasta Ab1 Abif Scf
19 months ago dh.heredero ▴ 10
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1
reply
260
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convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
23 months ago joannew • 0
5
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8
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1.3k
views
Ranges from a fasta file
biostrings fasta genomicranges granges
updated 3.3 years ago by 25k • written 3.3 years ago by ▴ 70
3
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3
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667
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Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer fasta import Biostrings
updated 3.3 years ago by 11k • written 3.3 years ago by ▴ 100
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2
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2.6k
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Converting Fastq to Fasta in R
R Bioinformatics Fastq Fasta
updated 3.3 years ago by 59k • written 3.3 years ago by • 0
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400
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Quantifying reporter expression to validate sequencing
alignment Fastq fasta
3.5 years ago A ▴ 40
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16
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2.4k
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Error while using buildindex for human genome
rsubread buildindex fasta alignment
3.6 years ago writetoroopali • 0
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741
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How to extract SNPs from multiple alignment fasta file?
snp multiple sequence alignment fasta Tutorial
updated 3.6 years ago by 25k • written 3.6 years ago by • 0
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538
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filter and trim large fasta/bam files
deep sequencing fasta bam trim
4.6 years ago achaillon • 0
2
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3
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1.2k
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Exporting a FASTA file from a getBM vs getSequence query
biomart fasta
updated 4.7 years ago by 59k • written 4.7 years ago by • 0
2
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4
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790
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convert a sequence to Ranges object
iranges fasta split
updated 5.3 years ago by 11k • written 5.3 years ago by ★ 1.5k
1
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2
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2.2k
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Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings fasta R Call2
updated 5.3 years ago by 25k • written 5.3 years ago by • 0
8
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14
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7.8k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa msaprettyprint() fasta
updated 5.0 years ago by • 0 • written 5.3 years ago by ▴ 50
1
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2
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1.3k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings fasta protein
updated 5.3 years ago by 59k • written 5.3 years ago by • 0
0
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5
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771
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Splitting a fasta file based on specific Amino acid for plotting
iranges biostrings fasta protein readaastringset
updated 5.6 years ago by 11k • written 5.6 years ago by ★ 1.5k
2
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1
reply
1.1k
views
export BSgenome directly in gzipped fasta
bsgenome gzip fasta
updated 6.1 years ago by ▴ 90 • written 6.1 years ago by ▴ 80
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4
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1.8k
views
DNAString: Standard checksum function?
Biostrings FASTA sequencing
6.2 years ago Henrik Bengtsson ★ 2.4k
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1
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1.1k
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vmatchpattern with indexed fasta files
fasta fai vmatchpattern biostrings
updated 6.4 years ago by 15k • written 6.5 years ago by • 0
2
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0
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2.2k
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News: Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub Gencode GFF3 FASTA News
6.7 years ago Sonali Arora ▴ 380
4
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3
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2.5k
views
a package for read.fasta
seqinr fasta
updated 6.7 years ago by 15k • written 6.7 years ago by ▴ 40
2
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4
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1.1k
views
customProDB: error aberrant fasta from indels
indel customprodb fasta variantannotation
updated 6.9 years ago by ▴ 50 • written 6.9 years ago by • 0
2
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2
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1.2k
views
BLAST export library 'annotate'
blast annotate biostrings export fasta
7.5 years ago b.stielow • 0
26 results • Page 1 of 1
Recent ...
Replies
Comment: how to make a group to apply the data to CAMERA by Akira • 0
Thank you so much for your quick answer!! I will look into them! I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Comment: Error using read.ilmn and neqc by Gordon Smyth 45k
I edited the title of your question to be more specific.
Answer: Using limma to read Illumina HT-12 v4 data by Gordon Smyth 45k
It seems clear that you haven't exported the correct intensity data from GenomeStudio, and I think you recognize that yourself in your ques…
Votes
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
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