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FeatureCounts
•
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0
votes
0
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84
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Feature Counts -R XS Read Assignment Tag
FeatureCounts
Rsubread
24 days ago
chris2.a.white
• 0
1
vote
1
reply
200
views
featureCounts unable to assign long reads to one specific isoform
featureCounts
Rsubread
updated 24 days ago by
Wei Shi
★ 3.6k • written 7 weeks ago by
Alex
• 0
7
votes
28
replies
6.0k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread
featurecounts
updated 7 weeks ago by
Gordon Smyth
50k • written 9.1 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
4
replies
353
views
Adjusting featureCounts settings in Galaxy for miRNA overlaps
featureCounts
Rsubread
updated 8 weeks ago by
Gordon Smyth
50k • written 8 weeks ago by
tjgray4
• 0
4
votes
6
replies
675
views
[BUG] Rsubread::featureCounts quirk in CORE files: different target list ordering for same target lists
featurecounts
Rsubread
8 weeks ago
isaac.vock
• 0
0
votes
2
replies
3.4k
views
Dealing with multi-overlapping and multi-mapping reads
RNA-seq
featureCounts
ht-seq
written 3.7 years ago by
ag1805x
▴ 80
0
votes
0
replies
841
views
Tutorial:
Read data file containing both counts and annotation into edgeR
rpkm
edgeR
featureCounts
7 months ago • updated 6 months ago
Gordon Smyth
50k
0
votes
2
replies
925
views
understanding differences in RSEM, STAR outputs and featureCounts
RNASeqData
Rsubread
mapping
featurecounts
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
vitoriastavis
• 0
1
vote
1
reply
608
views
featureCounts bug with unpaired reads
Rsubread
featureCounts
updated 8 months ago by
Yang Liao
▴ 380 • written 8 months ago by
StevenE.Strong
• 0
0
votes
1
reply
798
views
Potential segfault bug in featureCounts using long read data
Bioconductor
Rsubread
featureCounts
updated 10 months ago by
Wei Shi
★ 3.6k • written 11 months ago by
Carlos
• 0
0
votes
0
replies
382
views
How to extract the counts for non-split reads from paired end RNA-seq data?
rsubread
featurecounts
Bioconductor
countsextraction
11 months ago
barrypraveen
• 0
1
vote
5
replies
4.5k
views
featureCounts (subread v2.0.2) ERROR: invalid parameter: '−−countReadPairs'
subread
featureCounts
updated 8 months ago by
Yang Liao
▴ 380 • written 2.7 years ago by
s.muroy
▴ 10
0
votes
5
replies
2.2k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts
SAM
htseqcounts
updated 8 months ago by
Yang Liao
▴ 380 • written 6.9 years ago by
courtney.stairs
• 0
3
votes
16
replies
17k
views
featureCounts - paired-end data
featurecounts
rsubread
updated 9 months ago by
Robert
• 0 • written 8.9 years ago by
samuel collombet
▴ 140
14 results • Page
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Comment: error when using M-values in ChAMP
by
hortenseguillaume96
• 0
Hello Tian, I'd like to get the M-values matrix so that I can carry out a linear regression study. However, when I apply the champ.load fu…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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