Bioconductor Filter

Showing : Filter • reset

votes

replies

1.3k

views

limma filter genelist differential gene expression

updated 7.5 years ago by Gordon Smyth 50k • written 7.5 years ago by bi_Scholar • 0

votes

replies

3.5k

views

bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by svlachavas ▴ 830

votes

replies

1.3k

views

variantannotation vcf fixed filter

9.3 years ago Anna N. • 0

votes

replies

3.1k

views

deseq filter reads

9.3 years ago ccheung • 0

votes

replies

3.2k

views

DGElist filter edgeR

updated 6.8 years ago by Gordon Smyth 50k • written 6.8 years ago by alakatos ▴ 130

vote

761

views

filter deseq2

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by charles.foster ▴ 160

vote

1.0k

views

missing data filter

updated 8.4 years ago by James W. MacDonald 65k • written 8.4 years ago by rgescudero • 0

vote

1.3k

views

RNA WGCNA filter

4.8 years ago modarzi ▴ 10

vote

replies

3.7k

views

loop filter

written 6.4 years ago by kritikamish99 ▴ 10

vote

replies

868

views

R filter limma Normalization Microarray

12 months ago Abdul ▴ 20

votes

replies

657

views

filter deseq2

updated 12 months ago by Michael Love 41k • written 12 months ago by PD • 0

votes

replies

2.6k

views

probe filter subset gene symbol affy

9.1 years ago alakatos ▴ 130

votes

1.3k

views

flowcore gate subsetting filter

updated 8.6 years ago by Jiang, Mike ★ 1.3k • written 8.6 years ago by peterfoster ▴ 20

votes

1.8k

views

deseq2 filter genefilter

updated 6.4 years ago by Michael Love 41k • written 6.5 years ago by Björn • 0

votes

1.1k

views

rtracklayer gff filter

updated 5.2 years ago by Michael Lawrence ★ 11k • written 5.2 years ago by alslonik • 0

votes

682

views

flowCore openCyto Summary Result Filter

updated 4.0 years ago by Jake Wagner ▴ 310 • written 4.1 years ago by noviello • 0

votes

538

views

filter gate_quad_tmix gt_gating

2.1 years ago • updated 24 months ago Pierre • 0

17 results • Page 1 of 1

Recent ...

Replies

Comment: Different Shrunk Log2FC according with reference by Michael Love 41k

I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Votes

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Awards • All