Showing : FlowCytometry • reset
0
votes
0
replies
105
views
Macsquant FCS in read.FCS & opencyto
FlowCytometry flowWorkspace flowCore
5 weeks ago taylor.witte • 0
0
votes
0
replies
254
views
News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
0
votes
0
replies
343
views
Merging 2 staining panels
FlowCytometry flowCore
14 months ago michaela.gregorova13 • 0
2
votes
1
reply
880
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
17 months ago aguirre ▴ 20
0
votes
0
replies
544
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
17 months ago Dennis.hinkel • 0
1
vote
1
reply
606
views
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 18 months ago by ★ 3.9k • written 18 months ago by • 0
0
votes
0
replies
444
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
18 months ago Noël • 0
2
votes
9
replies
1.4k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 19 months ago by ▴ 350 • written 19 months ago by • 0
0
votes
0
replies
541
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
2.3 years ago markkelly1983 ▴ 20
0
votes
0
replies
682
views
Job: Bioconductor developer
FlowCytometry flowCore
2.4 years ago markkelly1983 ▴ 20
0
votes
1
reply
1.1k
views
[flowSOM] extracting data from tree
flowcytometry flowSOM flowSET flowFrame
5.0 years ago fabrizio.benedetti.82 • 0
0
votes
6
replies
2.1k
views
spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 6.2 years ago by • 0 • written 8.1 years ago by • 0
0
votes
1
reply
1.1k
views
[flowCore] linearization of logarithmic data seems to be calculated wrong
flowcore flowcytometry
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
0
votes
1
reply
1.2k
views
Installation of "flowWorkspace" on Ubuntu fails
bioconductor R flowcytometry
7.2 years ago mo • 0
0
votes
2
replies
2.0k
views
Scaling fcs files with flowCore
flowCore flowcytometry
8.1 years ago Jiang, Mike ★ 1.3k
0
votes
1
reply
1.8k
views
FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
8.1 years ago Jiang, Mike ★ 1.3k
0
votes
1
reply
1.2k
views
FlowViz package question
flowviz flowcytometry
8.1 years ago Jiang, Mike ★ 1.3k
0
votes
1
reply
1.4k
views
read.flowSet error Error: vector::_M_range_check
software error read.flowset() read.fcs flowcore flowcytometry
8.2 years ago e.bestion • 0
1
vote
2
replies
1.2k
views
openCyto - samples with low cell counts
flowcytometry opencyto
8.3 years ago Jiang, Mike ★ 1.3k
0
votes
1
reply
1.3k
views
samples are reordered in read.flowSet
flowcore flowcytometry
8.7 years ago Jiang, Mike ★ 1.3k
0
votes
2
replies
1.9k
views
xyplot can't find channel (flowViz)
flowcore flowviz flowcytometry
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
0
votes
0
replies
1.3k
views
Re: FlowStats help
flowclust opencyto flowcytometry
9.1 years ago Jiang, Mike ★ 1.3k
1
vote
1
reply
1.5k
views
flowCore: using read.FCS with which.lines is not time efficient?
flowcore read.FCS flowcytometry
updated 9.3 years ago by ★ 1.3k • written 9.5 years ago by ▴ 10
4
votes
1
reply
1.7k
views
News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
9.6 years ago Greg Finak ▴ 150
0
votes
0
replies
1.2k
views
FlowCore - reading in flowSets
FlowCytometry PROcess flowCore FlowCytometry PROcess flowCore
11.2 years ago Pieter Coussement ▴ 30
25 results • Page 1 of 1
Recent ...
Replies
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions by JKim • 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
United Kingdom, 2 minutes ago
United States, 3 minutes ago
Melbourne, Australia, 12 minutes ago
Germany, 15 minutes ago
France, 17 minutes ago
Traffic: 1108 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6