Bioconductor FlowSOM

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FlowSOM

updated 4 months ago by SamGG ▴ 350 • written 4 months ago by agus_rizzo • 0

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239

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FlowSOM

5 months ago agus_rizzo • 0

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516

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FlowSOM

updated 5 months ago by SamGG ▴ 350 • written 5 months ago by agus_rizzo • 0

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468

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FlowSOM cytofWorkflow

updated 13 months ago by helucro ▴ 70 • written 13 months ago by Anirban • 0

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765

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flowWorkspace CytoGLMM FlowSOM

2.4 years ago hbolouri • 0

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848

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FlowSOM

2.5 years ago jakub.savara • 0

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FlowSOM

2.8 years ago ismail.ameran • 0

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FlowSOM

updated 3.4 years ago by sofie.vangassen ▴ 10 • written 3.4 years ago by Václav • 0

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1.3k

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Cytofast FlowSom CyTOF fcs files

3.5 years ago domenico.somma • 0

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flowcytometry flowSOM flowSET flowFrame

5.0 years ago fabrizio.benedetti.82 • 0

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1.4k

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flowsom consensusclusterplus

7.1 years ago Lukas Weber • 0

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1.1k

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flowcore flowsom

7.6 years ago jeremyeadler • 0

12 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0

Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.

Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Votes

Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

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