Bioconductor FlowSet

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flow cytometry flowSet UMAP .fcs files

updated 4.3 years ago by mikhael.manurung ▴ 270 • written 4.3 years ago by s.lucasblack • 0

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904

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flowcytometry flowSOM flowSET flowFrame

4.6 years ago fabrizio.benedetti.82 • 0

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flowcore flowset bioconductor flow cytometry fcs file

5.8 years ago Samuel Ahuno • 0

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743

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FlowSet data visualization cellcounts

6.5 years ago Maria • 0

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flowcore opencyto gating flowset

updated 6.8 years ago by Jiang, Mike ★ 1.3k • written 6.8 years ago by jordan.xanthopoulos • 0

5 results • Page 1 of 1

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Comment: locateVariant from VariantAnnotation returns wrong results by nhaus • 0

Thank you very much for your quick reply! I guess if I do not know a priori where the SNP is located, I have to iterate thorugh the differe…

Comment: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i by Oenone • 0

I THINK I MIGHT HAVE WORKED IT OUT for some reason the data file was read in as characters and not integers, reloaded it in with them def…

Comment: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i by Oenone • 0

Here are some of the values for the returned call of: ``` below_zero <- apply(miRNA_counts < 0, 1, sum) > 0 below_zero ``` ![The retur…

Answer: locateVariant from VariantAnnotation returns wrong results by James W. MacDonald 64k

This is a [known and so far unfixed issue][1]. ``` > mapToTranscripts(snp, intronsByTranscript(TxDb.Hsapiens.UCSC.hg19.knownGene)) GR…

Comment: Result from GSEA for non-model organism not as expected by James W. MacDonald 64k

I asked you in a previous thread to **not add comments to old threads** and instead start a new one. Please follow that advice. It's fine i…

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Comment: Ensembl down???

Answer: Limma/DESeq2 for unbalanced nested design (paired samples)

Result from GSEA for non-model organism not as expected

Comment: DESeq2 estimateSizeFactors iterate takes too long

Answer: DESeq2 estimateSizeFactors iterate takes too long

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Scholar to Mike Smith ★ 6.2k

Scholar to Hervé Pagès 16k