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Fold Change
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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R
deseq2
edger
differential gene expression
fold change
updated 23 months ago by
ATpoint
★ 4.0k • written 5.7 years ago by
Beginner
▴ 60
1
vote
2
replies
2.1k
views
diffBind report Fold scale
diffBind
Fold Change
updated 2.9 years ago by
Joe Nicholas
• 0 • written 5.2 years ago by
joseluis.ruiz
• 0
2
votes
4
replies
1.2k
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
ilovesuperheroes1993
• 0
0
votes
0
replies
911
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
5.8 years ago
prakashpandey1111
• 0
1
vote
1
reply
1.3k
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown
stattest
fold change
updated 6.0 years ago by
James W. MacDonald
65k • written 6.1 years ago by
ag1805x
▴ 80
0
votes
1
reply
1.5k
views
Question on fold change calculation for microarray data
logfc
limma
fold change
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
Claudia
▴ 10
2
votes
7
replies
2.4k
views
About differentially expressed genes that found by edgeR
edgeR
DE analysis
fold change
cpm
updated 7.6 years ago by
Ryan C. Thompson
★ 7.9k • written 7.6 years ago by
Sara
▴ 10
7 results • Page
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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