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StatisticalMethod FoldChange edgeR RNASeq

4 months ago Sabiha ▴ 20

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2.2k

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FoldChange DiffBind lfcShrink

updated 9 months ago by Rory Stark ★ 5.1k • written 9 months ago by bhandary.8590 ▴ 20

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790

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FoldChange DiffBind lfcShrink Cut&TagData

10 months ago bhandary.8590 ▴ 20

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1.5k

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DESeq2 TPM Foldchange

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by dadca596 • 0

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884

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edgeR RNA-Seq log2 foldchange q_value

updated 2.3 years ago by Gordon Smyth 50k • written 2.3 years ago by johndavidgriner74 • 0

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1.1k

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sign FoldChange DESeq2 reference

updated 2.3 years ago by Michael Love 41k • written 2.3 years ago by yampolsk • 0

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4.7k

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DifferentialExpression DEA FC FoldChange edgeR

2.6 years ago zhxiaokang ▴ 20

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2.3k

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EdgeR RNAseq Foldchange

updated 2.8 years ago by swbarnes2 ★ 1.3k • written 2.8 years ago by najib • 0

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2.3k

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foldchange topGO DifferentialExpression enrichment

updated 3.4 years ago by Gordon Smyth 50k • written 3.4 years ago by lessismore ▴ 20

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1.4k

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limma microarray foldchange DEG GEO

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by Pietro ▴ 40

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1.3k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.0 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

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1.4k

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limma RNAseq foldchange

5.2 years ago • updated 5.1 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

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C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

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Scholar to ATpoint ★ 4.0k