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FourCseq
•
reset
0
votes
0
replies
530
views
FourCseq extraction of fragments
fourcseq
5.5 years ago
ferbecneu
• 0
1
vote
1
reply
703
views
FourCSeq Pipeline for Capture-C Data
fourcseq
updated 5.8 years ago by
felix.klein
▴ 150 • written 5.8 years ago by
mmackiewicz
• 0
0
votes
0
replies
704
views
FourCSeq: Error in getZScores
fourcseq
getzscores
6.0 years ago
Gustavo Ruiz
• 0
0
votes
2
replies
935
views
FourCSeq - errors in plotZScores
fourcseq
updated 6.8 years ago by
Wolfgang Huber
★ 13k • written 6.8 years ago by
rustavo
• 0
0
votes
2
replies
995
views
FourCseq, rawRanges Description
fourcseq
updated 7.7 years ago by
felix.klein
▴ 150 • written 7.7 years ago by
Theo
▴ 10
0
votes
2
replies
872
views
FourCseq: mixed amount of replication/samples
fourcseq
7.8 years ago
Theo
▴ 10
1
vote
8
replies
1.6k
views
FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base cutter
fourcseq
7.8 years ago • updated 7.7 years ago
Theo
▴ 10
1
vote
1
reply
889
views
FourCseq- adding information manually
fourcseq
updated 7.8 years ago by
felix.klein
▴ 150 • written 7.8 years ago by
tlgolan
• 0
0
votes
0
replies
770
views
FourCseq and local fit
fourcseq
7.8 years ago
tlgolan
• 0
0
votes
5
replies
1.1k
views
local fit and FourCseq
local fit
fourcseq
updated 7.8 years ago by
felix.klein
▴ 150 • written 7.8 years ago by
tlgolan
• 0
0
votes
3
replies
1.1k
views
[FourCSeq] plotDifferences and plotZscores
fourcseq
7.9 years ago • updated 7.8 years ago
fidlay
• 0
0
votes
2
replies
921
views
FourCSeq- without replicates
fourcseq
updated 7.9 years ago by
felix.klein
▴ 150 • written 7.9 years ago by
tlgolan
• 0
0
votes
2
replies
870
views
plotZScores error in FourCSeq
fourCseq
8.0 years ago • updated 7.9 years ago
snowhune
• 0
2
votes
2
replies
1.0k
views
FourCSeq- paired-end library ?
fourcseq
updated 8.0 years ago by
felix.klein
▴ 150 • written 8.0 years ago by
snowhune
• 0
0
votes
3
replies
1.3k
views
Error in "getZScores()" while running FourCSeq package
fourcseq
8.1 years ago
MaddieS
• 0
0
votes
3
replies
1.1k
views
FourCSeq what is inverse-vst
fourcseq
updated 8.3 years ago by
felix.klein
▴ 150 • written 8.3 years ago by
sinhashruti
• 0
0
votes
1
reply
1.0k
views
FourCSeq problem with getZScores and multiple viewpoints
FourCSeq
getZScores
viewpoints
software error
8.4 years ago
dzis
• 0
0
votes
7
replies
2.5k
views
fourCseq - error getZscores
fourcseq
updated 8.3 years ago by
felix.klein
▴ 150 • written 8.4 years ago by
samuel collombet
▴ 140
1
vote
10
replies
2.1k
views
FourC object from scratch
hi-c
HiTC
fourcseq
8.5 years ago • updated 8.4 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.2k
views
FourC object from scratch
hic-c
hitc
fourcseq
8.5 years ago
Nicolas Servant
▴ 260
3
votes
8
replies
1.7k
views
FourCSeq - how to write tables with the results
fourcseq
updated 5.4 years ago by
ferbecneu
• 0 • written 8.6 years ago by
francesc.lopez
• 0
2
votes
4
replies
2.2k
views
FourCSeq - how many bases to trim with countFragmentOverlaps
fourcseq
updated 8.0 years ago by
felix.klein
▴ 150 • written 8.6 years ago by
francesc.lopez
• 0
0
votes
2
replies
1.1k
views
FourCSeq problem with getZScores
FourCSeq
updated 8.7 years ago by
felix.klein
▴ 150 • written 8.7 years ago by
a.chesi
• 0
0
votes
1
reply
1.0k
views
FourCSeq - getZScores & getDifferences function
fourcseq
updated 8.7 years ago by
felix.klein
▴ 150 • written 8.7 years ago by
mqbsszsy
• 0
0
votes
1
reply
877
views
FourCSeq - Significant changes between condition without replicate
fourcseq
updated 8.7 years ago by
Wolfgang Huber
★ 13k • written 8.7 years ago by
julienpontis
• 0
0
votes
1
reply
848
views
FourCSeq - Significant Interaction
fourcseq
updated 8.7 years ago by
Wolfgang Huber
★ 13k • written 8.7 years ago by
julienpontis
• 0
0
votes
1
reply
785
views
FourCSeq - data(fc) ?
FourCSeq
updated 8.7 years ago by
Wolfgang Huber
★ 13k • written 8.7 years ago by
julienpontis
• 0
0
votes
7
replies
2.0k
views
FourCseq -problem with countFragmentOverlaps
FourCseq
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
dzis
• 0
4
votes
27
replies
3.7k
views
FourCseq - error countFragmentOverlaps()
FourCseq
fourcseq
updated 8.9 years ago by
ericaenjoy3
• 0 • written 8.9 years ago by
Theo
▴ 10
0
votes
11
replies
1.8k
views
FourCseq - error ountFragmentOverlaps()
fourcseq
9.1 years ago
samuel collombet
▴ 140
0
votes
4
replies
1.2k
views
fourCseq - getDifferences and normnalisation
fourcseq
updated 9.5 years ago by
felix.klein
▴ 150 • written 9.5 years ago by
samuel collombet
▴ 140
2
votes
4
replies
1.4k
views
fourCseq - zscore distribution - trans interractions
fourCseq
updated 9.0 years ago by
Martin Morgan
25k • written 9.5 years ago by
samuel collombet
▴ 140
32 results • Page
1 of 1
Recent ...
Replies
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
marka
• 0
As a single dad in Australia, finding time to unwind is rare, but [Lincoln Casino][1] has become my go-to escape after putting the kids to …
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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