Bioconductor GDC

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.1 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.2 years ago by enigmargs • 0

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3.2k

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tcgabiolinks gdc

7.4 years ago jshelton • 0

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3.1k

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gdc tcga wes gdc data

updated 6.0 years ago by Sean Davis 21k • written 6.0 years ago by Biologist ▴ 110

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tcgabiolinks tcga-brca gdc pam50 rna-seq

6.0 years ago pfrancislyon • 0

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GDC TCGA tcgabiolinks

updated 2.0 years ago by cute scientist • 0 • written 5.4 years ago by Antonio Ahn ▴ 10

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R gdc rna-seq dna methylation

updated 5.5 years ago by Sean Davis 21k • written 5.5 years ago by RichardJActon ▴ 50

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TCGA MAF GDC snp mutations

updated 4.9 years ago by Sean Davis 21k • written 4.9 years ago by mario.zanfardino ▴ 160

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1.2k

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TCGAbiolinks TCGA GDC

4.4 years ago modarzi ▴ 10

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genomicdatacommons tcga gdc rest http

updated 5.2 years ago by Sean Davis 21k • written 5.2 years ago by mk ▴ 20

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tcgabiolinks filtering gdc TCGABiolinks rnaseq

4.2 years ago jam526 • 0

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703

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TCGAbiolinks GDC TCGA

4.4 years ago modarzi ▴ 10

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491

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TCGA GenomicDataCommons GDC

written 9 months ago by António Miguel de Jesus Domingues ▴ 490

12 results • Page 1 of 1

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Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by sredemption • 0

Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)

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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

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