Bioconductor GDC

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494

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TCGA GenomicDataCommons GDC

written 9 months ago by António Miguel de Jesus Domingues ▴ 490

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2.1k

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GDC TCGA tcgabiolinks

updated 2.0 years ago by cute scientist • 0 • written 5.4 years ago by Antonio Ahn ▴ 10

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973

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tcgabiolinks filtering gdc TCGABiolinks rnaseq

4.2 years ago jam526 • 0

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707

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TCGAbiolinks GDC TCGA

4.4 years ago modarzi ▴ 10

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1.2k

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TCGAbiolinks TCGA GDC

4.4 years ago modarzi ▴ 10

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1.3k

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TCGA MAF GDC snp mutations

updated 5.0 years ago by Sean Davis 21k • written 5.0 years ago by mario.zanfardino ▴ 160

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1.1k

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genomicdatacommons tcga gdc rest http

updated 5.3 years ago by Sean Davis 21k • written 5.3 years ago by mk ▴ 20

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1.6k

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R gdc rna-seq dna methylation

updated 5.5 years ago by Sean Davis 21k • written 5.5 years ago by RichardJActon ▴ 50

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3.1k

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gdc tcga wes gdc data

updated 6.0 years ago by Sean Davis 21k • written 6.0 years ago by Biologist ▴ 110

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3.0k

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tcgabiolinks tcga-brca gdc pam50 rna-seq

6.1 years ago pfrancislyon • 0

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3.7k

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.1 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.2 years ago by enigmargs • 0

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3.2k

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tcgabiolinks gdc

7.4 years ago jshelton • 0

12 results • Page 1 of 1

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Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Comment: Limma design with continuous and categorical covariates by hortense96 • 0

Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …

Answer: minfi::read.metharray.exp by Basti ▴ 770

Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…

Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Votes

Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

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Scholar to Gordon Smyth 50k