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GDCquery
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TCGABiolinks::GDCquery() suddenly sending back unknown error
software error
error
tcgabiolinks
GDCquery
updated 6.5 years ago by
eshelden
▴ 40 • written 6.5 years ago by
jrlarsen
▴ 10
0
votes
2
replies
2.5k
views
Workflow type=Star_counts, I want to download FPKM or TPM values, but star_counts for which?
GDCquery
22 months ago
yuanyuan
• 0
0
votes
0
replies
647
views
how include slicing to manifest
gdcquery
6.0 years ago
dvortsov
• 0
0
votes
0
replies
1.3k
views
Error in value[[3L]](cond) : GDC server down, try to use this package later
GDCquery
5.8 years ago
sechenmo
• 0
0
votes
0
replies
956
views
TCGAbiolinks specific mutation query
TCGAbiolinks
TCGA
Mutation
GDCquery
rnaseq
5.1 years ago
Yonatan Amzaleg
• 0
5 results • Page
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Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
sredemption
• 0
Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)
Votes
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
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