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GDCquery
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Workflow type=Star_counts, I want to download FPKM or TPM values, but star_counts for which?
GDCquery
22 months ago
yuanyuan
• 0
0
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0
replies
957
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TCGAbiolinks specific mutation query
TCGAbiolinks
TCGA
Mutation
GDCquery
rnaseq
5.1 years ago
Yonatan Amzaleg
• 0
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1.3k
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Error in value[[3L]](cond) : GDC server down, try to use this package later
GDCquery
5.8 years ago
sechenmo
• 0
0
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0
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647
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how include slicing to manifest
gdcquery
6.0 years ago
dvortsov
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1
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2
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1.5k
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TCGABiolinks::GDCquery() suddenly sending back unknown error
software error
error
tcgabiolinks
GDCquery
updated 6.5 years ago by
eshelden
▴ 40 • written 6.5 years ago by
jrlarsen
▴ 10
5 results • Page
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Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up question. Following up in In your [1-2-3 article][1], you say that > "... the …
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Comment: Error retrieving ensembl gene id using biomaRt...
by
James W. MacDonald
65k
Or that. ;-D
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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